Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14446 | 3' | -62 | NC_003521.1 | + | 153384 | 0.66 | 0.805961 |
Target: 5'- --aGCCCGUCGuagcgcaggaucuccUCGUGCaGGUGCGCc -3' miRNA: 3'- gggCGGGCAGC---------------AGCGCGcUCGCGUGu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 149524 | 0.66 | 0.810823 |
Target: 5'- aCCCGaCCUcuucgaGUCGgGCG-GCGCGCGc -3' miRNA: 3'- -GGGC-GGGcag---CAGCgCGCuCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 109182 | 0.66 | 0.77755 |
Target: 5'- gCCGCCaCGauggGUCGCGUGGuGUGCAUg -3' miRNA: 3'- gGGCGG-GCag--CAGCGCGCU-CGCGUGu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 56127 | 0.66 | 0.810823 |
Target: 5'- gCCCaGCaCCa-CGUCGgGCGAGUGCGg- -3' miRNA: 3'- -GGG-CG-GGcaGCAGCgCGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 106388 | 0.66 | 0.810823 |
Target: 5'- gCCGCcuccuCCGUCGUCGgGUG-GCGUg-- -3' miRNA: 3'- gGGCG-----GGCAGCAGCgCGCuCGCGugu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 118909 | 0.66 | 0.802694 |
Target: 5'- cCUCGCCC-UCGUCgGCGCcgcGGCGUggGCGg -3' miRNA: 3'- -GGGCGGGcAGCAG-CGCGc--UCGCG--UGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 150752 | 0.66 | 0.77755 |
Target: 5'- gCUGCCCGgacUGcUC-CGCGAGCGCGuCGg -3' miRNA: 3'- gGGCGGGCa--GC-AGcGCGCUCGCGU-GU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 144938 | 0.66 | 0.794434 |
Target: 5'- gUCGCgCGUCGcCGCGCuGGCuCGCGa -3' miRNA: 3'- gGGCGgGCAGCaGCGCGcUCGcGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 127851 | 0.66 | 0.785206 |
Target: 5'- gCCaGCCCGUCGggcaggUugcccaccaggauGCGCGGcGUGCACAg -3' miRNA: 3'- gGG-CGGGCAGCa-----G-------------CGCGCU-CGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 69966 | 0.66 | 0.780112 |
Target: 5'- gCCCGCCCccgcggaGaagccgacgcgcgucUCGUCGUgcagucccaGCGAGCGCAg- -3' miRNA: 3'- -GGGCGGG-------C---------------AGCAGCG---------CGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 206702 | 0.66 | 0.768939 |
Target: 5'- aCCUcCCCGUCGcgauaCGUGCGGGCG-GCGg -3' miRNA: 3'- -GGGcGGGCAGCa----GCGCGCUCGCgUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 91308 | 0.66 | 0.802694 |
Target: 5'- -aCGCgCGUaugCGUgugCGCGCGGGgGCACGc -3' miRNA: 3'- ggGCGgGCA---GCA---GCGCGCUCgCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 84738 | 0.66 | 0.810823 |
Target: 5'- aCUGCCguCGUCGUCuuGCuCGGGCGCGg- -3' miRNA: 3'- gGGCGG--GCAGCAG--CGcGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 88842 | 0.66 | 0.794434 |
Target: 5'- gCCG-CCGUCGUagcacaGCaCGGGCGUGCGa -3' miRNA: 3'- gGGCgGGCAGCAg-----CGcGCUCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 130119 | 0.66 | 0.810823 |
Target: 5'- uUCUGCCCcugcGUCGUCG-GCG-GCGC-CGc -3' miRNA: 3'- -GGGCGGG----CAGCAGCgCGCuCGCGuGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 224721 | 0.66 | 0.78605 |
Target: 5'- uCCCGCCCGUgGugcUCGC-CGA-CGCAg- -3' miRNA: 3'- -GGGCGGGCAgC---AGCGcGCUcGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 45052 | 0.66 | 0.768072 |
Target: 5'- gCCGCgCCGcUCGUgccaggcaaCGCGCGuccugcgugagguGGCGCAUAc -3' miRNA: 3'- gGGCG-GGC-AGCA---------GCGCGC-------------UCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 102739 | 0.66 | 0.78605 |
Target: 5'- aCgUGCUgGUCGUUGgGCaGGUGCACGc -3' miRNA: 3'- -GgGCGGgCAGCAGCgCGcUCGCGUGU- -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 196768 | 0.66 | 0.768939 |
Target: 5'- cCCCGgCCGgcgCGaC-CGCGGGCGCGg- -3' miRNA: 3'- -GGGCgGGCa--GCaGcGCGCUCGCGUgu -5' |
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14446 | 3' | -62 | NC_003521.1 | + | 221835 | 0.66 | 0.78605 |
Target: 5'- gUCuCCC-UCGUCGCGCG-GCGCGu- -3' miRNA: 3'- gGGcGGGcAGCAGCGCGCuCGCGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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