miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 40159 0.67 0.990168
Target:  5'- cGGCgagaaGCGCAgGCGUGCGuguGUGAGcuccGAAGGc -3'
miRNA:   3'- -CCG-----CGCGUgCGCGCGC---CAUUU----UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 40174 0.74 0.811507
Target:  5'- cGGCGCGUugGCGUGcCGGUc------- -3'
miRNA:   3'- -CCGCGCGugCGCGC-GCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 40715 0.72 0.895547
Target:  5'- uGUGUGCugGCGCGCGGc-------- -3'
miRNA:   3'- cCGCGCGugCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 46397 0.71 0.919705
Target:  5'- gGGUGCGUgggGCGCGCGGgccAGGAAGc -3'
miRNA:   3'- -CCGCGCGug-CGCGCGCCau-UUUUUCu -5'
14446 5' -52.6 NC_003521.1 + 47031 0.7 0.953027
Target:  5'- uGGgGCGCugGUagucGCGCauGGUGuAGAAGAc -3'
miRNA:   3'- -CCgCGCGugCG----CGCG--CCAUuUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 49891 0.67 0.991358
Target:  5'- uGGCGUGCGUGUGgCGaCGGcagccaucuUAGAAGAGAc -3'
miRNA:   3'- -CCGCGCGUGCGC-GC-GCC---------AUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 50486 0.71 0.914012
Target:  5'- cGGCGCGUgccacaGCGUGUcggcgGCGGUGGAGAuGGu -3'
miRNA:   3'- -CCGCGCG------UGCGCG-----CGCCAUUUUUuCU- -5'
14446 5' -52.6 NC_003521.1 + 52508 0.69 0.970091
Target:  5'- aGGUGgGCGguaGagaGCGCGGcGAAGAAGAg -3'
miRNA:   3'- -CCGCgCGUg--Cg--CGCGCCaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 55018 0.67 0.990168
Target:  5'- aGGCGCaGCGCcaGCGUcgGCGGcuccGAGAGAc -3'
miRNA:   3'- -CCGCG-CGUG--CGCG--CGCCauu-UUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 55118 0.67 0.988001
Target:  5'- cGGCGagaCGCGgaccucaaauaagguCGCgGCGCGG-AGAGGAGAa -3'
miRNA:   3'- -CCGC---GCGU---------------GCG-CGCGCCaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 55728 0.73 0.860328
Target:  5'- cGGCGCGCAgcgccucccaGCGCGCGGgcGGc---- -3'
miRNA:   3'- -CCGCGCGUg---------CGCGCGCCauUUuuucu -5'
14446 5' -52.6 NC_003521.1 + 56807 0.66 0.992432
Target:  5'- cGGCGuCGCGCGCGaacgaGuCGGccgauaUGAGGAAGu -3'
miRNA:   3'- -CCGC-GCGUGCGCg----C-GCC------AUUUUUUCu -5'
14446 5' -52.6 NC_003521.1 + 57508 0.71 0.919146
Target:  5'- cGGCGCGCACG-GCGCugaucacGGgcGAGAuuuugcAGAg -3'
miRNA:   3'- -CCGCGCGUGCgCGCG-------CCauUUUU------UCU- -5'
14446 5' -52.6 NC_003521.1 + 58036 0.71 0.921917
Target:  5'- gGGCGCGCGCGUGUugcugcugGCGGccacccgauacggcGAAGAGGGc -3'
miRNA:   3'- -CCGCGCGUGCGCG--------CGCCa-------------UUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 59107 0.66 0.993754
Target:  5'- aGCGUGCGCGCguccaucaugucgaaGCGCacGGUGGAuuuGAa -3'
miRNA:   3'- cCGCGCGUGCG---------------CGCG--CCAUUUuuuCU- -5'
14446 5' -52.6 NC_003521.1 + 59656 0.66 0.99426
Target:  5'- cGGCaGaCGCugGCGCGCcu---GGAGGAg -3'
miRNA:   3'- -CCG-C-GCGugCGCGCGccauuUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 60191 0.72 0.888938
Target:  5'- cGGCGUGagaACGCGCGCacguuagauGGaagGAGAAAGGg -3'
miRNA:   3'- -CCGCGCg--UGCGCGCG---------CCa--UUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 61452 0.67 0.985816
Target:  5'- aGGUcaucCGCACGCGCGUcaagcaGGUGAcgcaagacacGGAAGAg -3'
miRNA:   3'- -CCGc---GCGUGCGCGCG------CCAUU----------UUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 62240 0.8 0.489611
Target:  5'- gGGCGCccgGCugGaCGCGCGGcUGGAGAAGGa -3'
miRNA:   3'- -CCGCG---CGugC-GCGCGCC-AUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 64918 0.69 0.963903
Target:  5'- aGCaGCuGCACGUGgaGCGGUugGAAAAGGAa -3'
miRNA:   3'- cCG-CG-CGUGCGCg-CGCCA--UUUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.