miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 393 0.72 0.895547
Target:  5'- uGUGUGCugGCGCGCGGc-------- -3'
miRNA:   3'- cCGCGCGugCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 3217 0.66 0.995714
Target:  5'- cGGUGUGUGCGUGUuCGGUGAu----- -3'
miRNA:   3'- -CCGCGCGUGCGCGcGCCAUUuuuucu -5'
14446 5' -52.6 NC_003521.1 + 5548 0.69 0.972065
Target:  5'- cGGCGCGUcguuccucccgguuGCGgGCucgGCGGUGGAAAu-- -3'
miRNA:   3'- -CCGCGCG--------------UGCgCG---CGCCAUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 16746 0.79 0.525133
Target:  5'- cGGCGCGCGCGCcCGCcggaggacgaggagGGUGAcGAAGAg -3'
miRNA:   3'- -CCGCGCGUGCGcGCG--------------CCAUUuUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 17220 0.67 0.991358
Target:  5'- aGCGuCGC-CGuCGCGCGGUAu------ -3'
miRNA:   3'- cCGC-GCGuGC-GCGCGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 18987 0.66 0.992432
Target:  5'- aGGaCGCGC-CGCGCGac--GAGGGAGAc -3'
miRNA:   3'- -CC-GCGCGuGCGCGCgccaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 20751 0.67 0.987405
Target:  5'- uGCGUGUACGCGCuGCuGGUGc------ -3'
miRNA:   3'- cCGCGCGUGCGCG-CG-CCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 24940 0.67 0.988853
Target:  5'- cGUGUGUuuGCGCGUGGaGAAcGAAGAa -3'
miRNA:   3'- cCGCGCGugCGCGCGCCaUUU-UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 25629 0.68 0.984078
Target:  5'- uGGCGCuGCugGCGCGUGa--------- -3'
miRNA:   3'- -CCGCG-CGugCGCGCGCcauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 26025 0.71 0.914012
Target:  5'- cGGCGC-C-CGaCG-GCGGUGAAGAGGAc -3'
miRNA:   3'- -CCGCGcGuGC-GCgCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 27110 0.74 0.784843
Target:  5'- cGGCGCGCAgGCcgGUGCGGgcGAAcuccauGAGGu -3'
miRNA:   3'- -CCGCGCGUgCG--CGCGCCauUUU------UUCU- -5'
14446 5' -52.6 NC_003521.1 + 28471 0.67 0.988853
Target:  5'- gGGCgGUGCACcaGCGgGUGGUGAu--GGGc -3'
miRNA:   3'- -CCG-CGCGUG--CGCgCGCCAUUuuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 28732 0.67 0.991358
Target:  5'- uGGCGCacGCcgacaaccagACGCGCGCGGg-------- -3'
miRNA:   3'- -CCGCG--CG----------UGCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 30165 0.7 0.948959
Target:  5'- gGGCGUcacgcguugucGCAUgaGCGCGCGGUugacguAGAAGGc -3'
miRNA:   3'- -CCGCG-----------CGUG--CGCGCGCCAuu----UUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 31020 0.66 0.995714
Target:  5'- cGGCGaGgACGCGUucGUGGUGGugGGGGg -3'
miRNA:   3'- -CCGCgCgUGCGCG--CGCCAUUuuUUCU- -5'
14446 5' -52.6 NC_003521.1 + 32731 0.66 0.99426
Target:  5'- uGGCGaCGCcaccaGCGgGCGCGG-AGGAAc-- -3'
miRNA:   3'- -CCGC-GCG-----UGCgCGCGCCaUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 35150 0.67 0.987405
Target:  5'- gGGUGCGcCACGCGCcCGGg-------- -3'
miRNA:   3'- -CCGCGC-GUGCGCGcGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 36891 0.69 0.963903
Target:  5'- gGGCGUcagGCA-GC-CGUGGUGGAAGAGGc -3'
miRNA:   3'- -CCGCG---CGUgCGcGCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 37129 0.69 0.960495
Target:  5'- cGGCGCGCAacaUGcCGCGCGGc-------- -3'
miRNA:   3'- -CCGCGCGU---GC-GCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 39584 0.68 0.982183
Target:  5'- cGGCGUG-AUGCGCGC-GUAGAAGc-- -3'
miRNA:   3'- -CCGCGCgUGCGCGCGcCAUUUUUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.