miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 185208 0.65 0.996146
Target:  5'- cGGUGUGgGC-CGCGCGGgacugcguguacgacGAGGAGAc -3'
miRNA:   3'- -CCGCGCgUGcGCGCGCCau-------------UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 32731 0.66 0.99426
Target:  5'- uGGCGaCGCcaccaGCGgGCGCGG-AGGAAc-- -3'
miRNA:   3'- -CCGC-GCG-----UGCgCGCGCCaUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 117928 0.66 0.993396
Target:  5'- cGGUGCGCAgGaCGgG-GGaGGAGGAGAg -3'
miRNA:   3'- -CCGCGCGUgC-GCgCgCCaUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 147445 0.66 0.99503
Target:  5'- aGGCuGCGCGCGCGgaaguaGCGGa-------- -3'
miRNA:   3'- -CCG-CGCGUGCGCg-----CGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 90880 0.66 0.99503
Target:  5'- aGCGCGCAUGCGCaCGuUGAAc---- -3'
miRNA:   3'- cCGCGCGUGCGCGcGCcAUUUuuucu -5'
14446 5' -52.6 NC_003521.1 + 120579 0.66 0.995714
Target:  5'- aGGCGaUGCACG-GCGCGGc-------- -3'
miRNA:   3'- -CCGC-GCGUGCgCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 240122 0.66 0.993396
Target:  5'- gGGCGUGCggucgucccgGCGgGCGCGG-AAAGc--- -3'
miRNA:   3'- -CCGCGCG----------UGCgCGCGCCaUUUUuucu -5'
14446 5' -52.6 NC_003521.1 + 166274 0.66 0.993396
Target:  5'- gGGCacGCGCACG-GCGCGGc-------- -3'
miRNA:   3'- -CCG--CGCGUGCgCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 91175 0.66 0.99426
Target:  5'- aGgGCGCAUGCGCcucuggaaGCGGUAc------ -3'
miRNA:   3'- cCgCGCGUGCGCG--------CGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 56807 0.66 0.992432
Target:  5'- cGGCGuCGCGCGCGaacgaGuCGGccgauaUGAGGAAGu -3'
miRNA:   3'- -CCGC-GCGUGCGCg----C-GCC------AUUUUUUCu -5'
14446 5' -52.6 NC_003521.1 + 127086 0.66 0.992432
Target:  5'- aGC-CGCcagcaggaACGuCGgGCGGUAGAAGAGGu -3'
miRNA:   3'- cCGcGCG--------UGC-GCgCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 225846 0.66 0.993396
Target:  5'- cGGCGCGCuCGUG-GUGGUGc------ -3'
miRNA:   3'- -CCGCGCGuGCGCgCGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 81643 0.66 0.992432
Target:  5'- cGGCGCGgAUG-GUGCGGUcuGAAc-- -3'
miRNA:   3'- -CCGCGCgUGCgCGCGCCAuuUUUucu -5'
14446 5' -52.6 NC_003521.1 + 59656 0.66 0.99426
Target:  5'- cGGCaGaCGCugGCGCGCcu---GGAGGAg -3'
miRNA:   3'- -CCG-C-GCGugCGCGCGccauuUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 59107 0.66 0.993754
Target:  5'- aGCGUGCGCGCguccaucaugucgaaGCGCacGGUGGAuuuGAa -3'
miRNA:   3'- cCGCGCGUGCG---------------CGCG--CCAUUUuuuCU- -5'
14446 5' -52.6 NC_003521.1 + 78885 0.66 0.993396
Target:  5'- aGGCGCGUcaggggguccACGCGgGCcucGUAGAcgGGGa -3'
miRNA:   3'- -CCGCGCG----------UGCGCgCGc--CAUUUuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 70364 0.66 0.992432
Target:  5'- cGGCGggguagagcCGCAgGCG-GCGGUAGAGGu-- -3'
miRNA:   3'- -CCGC---------GCGUgCGCgCGCCAUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 138709 0.66 0.994178
Target:  5'- gGGCG-GCACGgGCGCuggcuGGUGGugcguccGGAGGGu -3'
miRNA:   3'- -CCGCgCGUGCgCGCG-----CCAUU-------UUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 3217 0.66 0.995714
Target:  5'- cGGUGUGUGCGUGUuCGGUGAu----- -3'
miRNA:   3'- -CCGCGCGUGCGCGcGCCAUUuuuucu -5'
14446 5' -52.6 NC_003521.1 + 115651 0.66 0.995649
Target:  5'- uGCGUGUcgGCGCcccagugGCG-GGUGAAGAAGGc -3'
miRNA:   3'- cCGCGCG--UGCG-------CGCgCCAUUUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.