miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 234196 0.71 0.919705
Target:  5'- gGGCcaaGCGUuCGCGCGCGGccuccGAAGAc -3'
miRNA:   3'- -CCG---CGCGuGCGCGCGCCauuu-UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 85683 0.73 0.867797
Target:  5'- cGGCGUccaGCACGCGCcGCaGGUucuccAGGGAGAa -3'
miRNA:   3'- -CCGCG---CGUGCGCG-CG-CCAu----UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 144290 0.72 0.882106
Target:  5'- cGGCGacucgcugcugcCGCACGCGCuGCGGUucgu-GGAc -3'
miRNA:   3'- -CCGC------------GCGUGCGCG-CGCCAuuuuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 393 0.72 0.895547
Target:  5'- uGUGUGCugGCGCGCGGc-------- -3'
miRNA:   3'- cCGCGCGugCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 218380 0.72 0.895547
Target:  5'- aGGCGUGCcgcgugaaGCGCGgGCGGUAc------ -3'
miRNA:   3'- -CCGCGCG--------UGCGCgCGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 166893 0.72 0.895547
Target:  5'- -cCGCGgGCGCGCGgGGUAGGu--GAa -3'
miRNA:   3'- ccGCGCgUGCGCGCgCCAUUUuuuCU- -5'
14446 5' -52.6 NC_003521.1 + 103737 0.71 0.914012
Target:  5'- aGGUGcCGCAgcacCGcCGCGUGGUGGAAGuAGAc -3'
miRNA:   3'- -CCGC-GCGU----GC-GCGCGCCAUUUUU-UCU- -5'
14446 5' -52.6 NC_003521.1 + 57508 0.71 0.919146
Target:  5'- cGGCGCGCACG-GCGCugaucacGGgcGAGAuuuugcAGAg -3'
miRNA:   3'- -CCGCGCGUGCgCGCG-------CCauUUUU------UCU- -5'
14446 5' -52.6 NC_003521.1 + 129784 0.71 0.919705
Target:  5'- -cCGCGCACGUGCGCGccGAGGccGAc -3'
miRNA:   3'- ccGCGCGUGCGCGCGCcaUUUUuuCU- -5'
14446 5' -52.6 NC_003521.1 + 55728 0.73 0.860328
Target:  5'- cGGCGCGCAgcgccucccaGCGCGCGGgcGGc---- -3'
miRNA:   3'- -CCGCGCGUg---------CGCGCGCCauUUuuucu -5'
14446 5' -52.6 NC_003521.1 + 228058 0.73 0.860328
Target:  5'- cGGgGCGCACGCGCG-GGUc------- -3'
miRNA:   3'- -CCgCGCGUGCGCGCgCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 101801 0.73 0.827665
Target:  5'- gGGCGCGCACgaagcccaggggGCGguCGCGGUAGGccucgggcacgauGAAGAg -3'
miRNA:   3'- -CCGCGCGUG------------CGC--GCGCCAUUU-------------UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 196775 0.85 0.280155
Target:  5'- cGGCGCGacCGCGgGCGCGGUAAAcgGGAc -3'
miRNA:   3'- -CCGCGC--GUGCgCGCGCCAUUUuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 62240 0.8 0.489611
Target:  5'- gGGCGCccgGCugGaCGCGCGGcUGGAGAAGGa -3'
miRNA:   3'- -CCGCG---CGugC-GCGCGCC-AUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 211573 0.77 0.668483
Target:  5'- aGCGCGCACGCucGCGgCGGUGuccccGGAGAc -3'
miRNA:   3'- cCGCGCGUGCG--CGC-GCCAUuu---UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 184604 0.76 0.688571
Target:  5'- cGGCGCGCAuacaguaucgUGCGUGCGGUAc---AGAc -3'
miRNA:   3'- -CCGCGCGU----------GCGCGCGCCAUuuuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 178383 0.75 0.747452
Target:  5'- cGUGCGCGCGCG-GCGGgcucagacGAGGAGAu -3'
miRNA:   3'- cCGCGCGUGCGCgCGCCau------UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 27110 0.74 0.784843
Target:  5'- cGGCGCGCAgGCcgGUGCGGgcGAAcuccauGAGGu -3'
miRNA:   3'- -CCGCGCGUgCG--CGCGCCauUUU------UUCU- -5'
14446 5' -52.6 NC_003521.1 + 40174 0.74 0.811507
Target:  5'- cGGCGCGUugGCGUGcCGGUc------- -3'
miRNA:   3'- -CCGCGCGugCGCGC-GCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 224085 0.74 0.820086
Target:  5'- cGGCGgGCGCGCGCGcCGGc-------- -3'
miRNA:   3'- -CCGCgCGUGCGCGC-GCCauuuuuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.