miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 90082 1.12 0.006936
Target:  5'- gGGCGCGCACGCGCGCGGUAAAAAAGAa -3'
miRNA:   3'- -CCGCGCGUGCGCGCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 111046 0.87 0.212459
Target:  5'- cGGCGCGCACGUGCGCGGgacaggcgcgguAGAGGGc -3'
miRNA:   3'- -CCGCGCGUGCGCGCGCCauu---------UUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 196775 0.85 0.280155
Target:  5'- cGGCGCGacCGCGgGCGCGGUAAAcgGGAc -3'
miRNA:   3'- -CCGCGC--GUGCgCGCGCCAUUUuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 123681 0.84 0.307186
Target:  5'- cGGCGCGCugcgGCGUG-GCGGUGGAAGAGGa -3'
miRNA:   3'- -CCGCGCG----UGCGCgCGCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 62240 0.8 0.489611
Target:  5'- gGGCGCccgGCugGaCGCGCGGcUGGAGAAGGa -3'
miRNA:   3'- -CCGCG---CGugC-GCGCGCC-AUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 16746 0.79 0.525133
Target:  5'- cGGCGCGCGCGCcCGCcggaggacgaggagGGUGAcGAAGAg -3'
miRNA:   3'- -CCGCGCGUGCGcGCG--------------CCAUUuUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 211882 0.77 0.648279
Target:  5'- aGgGCGC-CGCGCGUGGUAuagugcgccauaGAGAAGAg -3'
miRNA:   3'- cCgCGCGuGCGCGCGCCAU------------UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 211573 0.77 0.668483
Target:  5'- aGCGCGCACGCucGCGgCGGUGuccccGGAGAc -3'
miRNA:   3'- cCGCGCGUGCG--CGC-GCCAUuu---UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 184604 0.76 0.688571
Target:  5'- cGGCGCGCAuacaguaucgUGCGUGCGGUAc---AGAc -3'
miRNA:   3'- -CCGCGCGU----------GCGCGCGCCAUuuuuUCU- -5'
14446 5' -52.6 NC_003521.1 + 112803 0.75 0.747452
Target:  5'- cGGCGCGaggugcCGCGCaCGGUGAAcGAGAu -3'
miRNA:   3'- -CCGCGCgu----GCGCGcGCCAUUUuUUCU- -5'
14446 5' -52.6 NC_003521.1 + 178383 0.75 0.747452
Target:  5'- cGUGCGCGCGCG-GCGGgcucagacGAGGAGAu -3'
miRNA:   3'- cCGCGCGUGCGCgCGCCau------UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 27110 0.74 0.784843
Target:  5'- cGGCGCGCAgGCcgGUGCGGgcGAAcuccauGAGGu -3'
miRNA:   3'- -CCGCGCGUgCG--CGCGCCauUUU------UUCU- -5'
14446 5' -52.6 NC_003521.1 + 95109 0.74 0.811507
Target:  5'- cGGcCGCGCGCGCuugaGCGUGGccuuGAAGAg -3'
miRNA:   3'- -CC-GCGCGUGCG----CGCGCCauuuUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 103127 0.74 0.811507
Target:  5'- uGGCGCaGCGCGCG-GCGGUGc------ -3'
miRNA:   3'- -CCGCG-CGUGCGCgCGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 40174 0.74 0.811507
Target:  5'- cGGCGCGUugGCGUGcCGGUc------- -3'
miRNA:   3'- -CCGCGCGugCGCGC-GCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 224085 0.74 0.820086
Target:  5'- cGGCGgGCGCGCGCGcCGGc-------- -3'
miRNA:   3'- -CCGCgCGUGCGCGC-GCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 97297 0.74 0.820087
Target:  5'- cGGCG-GCGCGCGUGCGGa-------- -3'
miRNA:   3'- -CCGCgCGUGCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 101801 0.73 0.827665
Target:  5'- gGGCGCGCACgaagcccaggggGCGguCGCGGUAGGccucgggcacgauGAAGAg -3'
miRNA:   3'- -CCGCGCGUG------------CGC--GCGCCAUUU-------------UUUCU- -5'
14446 5' -52.6 NC_003521.1 + 228058 0.73 0.860328
Target:  5'- cGGgGCGCACGCGCG-GGUc------- -3'
miRNA:   3'- -CCgCGCGUGCGCGCgCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 55728 0.73 0.860328
Target:  5'- cGGCGCGCAgcgccucccaGCGCGCGGgcGGc---- -3'
miRNA:   3'- -CCGCGCGUg---------CGCGCGCCauUUuuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.