miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 3' -54.5 NC_003521.1 + 169043 0.66 0.973513
Target:  5'- cGUCCUGGUcgUCCGGGgg--GAUGCGCa -3'
miRNA:   3'- cUAGGGUCG--GGGCCUaugaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 206310 0.66 0.973513
Target:  5'- cGUCUCGGCCCgCGGccGCUaccUGCGCu -3'
miRNA:   3'- cUAGGGUCGGG-GCCuaUGAcu-AUGCG- -5'
14447 3' -54.5 NC_003521.1 + 205836 0.66 0.973513
Target:  5'- -cUCgCUGGCCCCGGAgacCUucUGCGCc -3'
miRNA:   3'- cuAG-GGUCGGGGCCUau-GAcuAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 24794 0.67 0.970796
Target:  5'- --aCCCgcgacuGGCCCUGGGcccugcgcuUGCUGGUGgGCu -3'
miRNA:   3'- cuaGGG------UCGGGGCCU---------AUGACUAUgCG- -5'
14447 3' -54.5 NC_003521.1 + 204505 0.67 0.970796
Target:  5'- uGUCCCcacGCCCCG---ACUGAgggUGCGCc -3'
miRNA:   3'- cUAGGGu--CGGGGCcuaUGACU---AUGCG- -5'
14447 3' -54.5 NC_003521.1 + 88143 0.67 0.970796
Target:  5'- --aCCgAGCCgCUGGAgcgGCUGcugACGCa -3'
miRNA:   3'- cuaGGgUCGG-GGCCUa--UGACua-UGCG- -5'
14447 3' -54.5 NC_003521.1 + 38267 0.67 0.970796
Target:  5'- gGGUCagCAGCCCCaGGAgGCcGGcGCGCa -3'
miRNA:   3'- -CUAGg-GUCGGGG-CCUaUGaCUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 137284 0.67 0.968185
Target:  5'- --cCCCAGCgaCCUGGAgcugcggguggcgcgGCUGcUGCGCg -3'
miRNA:   3'- cuaGGGUCG--GGGCCUa--------------UGACuAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 88957 0.67 0.967885
Target:  5'- ----aCAGCgCCCGGcgACUGAUcugcaGCGCc -3'
miRNA:   3'- cuaggGUCG-GGGCCuaUGACUA-----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 174135 0.67 0.967885
Target:  5'- gGGUCgCAGCCCaGGAggUACUGAgcaaagaccCGCa -3'
miRNA:   3'- -CUAGgGUCGGGgCCU--AUGACUau-------GCG- -5'
14447 3' -54.5 NC_003521.1 + 116258 0.67 0.964774
Target:  5'- --aCCUGGCCUCGGAc-CUGAUcgugacguacguGCGCa -3'
miRNA:   3'- cuaGGGUCGGGGCCUauGACUA------------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 237423 0.67 0.961458
Target:  5'- --cCCCAuCCCCGGAUGCcg--GCGUc -3'
miRNA:   3'- cuaGGGUcGGGGCCUAUGacuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 113007 0.67 0.961458
Target:  5'- --aCCCgGGCaccuucgaCCGGcacGUGCUGGUGCGCc -3'
miRNA:   3'- cuaGGG-UCGg-------GGCC---UAUGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 235123 0.67 0.961458
Target:  5'- cGAUagaCAGCCCCcgGGAUGgUGAU-CGCc -3'
miRNA:   3'- -CUAgg-GUCGGGG--CCUAUgACUAuGCG- -5'
14447 3' -54.5 NC_003521.1 + 214511 0.67 0.961458
Target:  5'- ---gCCGGCCCUGGAaGCgcgGAcaGCGCg -3'
miRNA:   3'- cuagGGUCGGGGCCUaUGa--CUa-UGCG- -5'
14447 3' -54.5 NC_003521.1 + 30943 0.67 0.961458
Target:  5'- ---aCgAGCCCCGGAUagagACUGAcgggacucgGCGCu -3'
miRNA:   3'- cuagGgUCGGGGCCUA----UGACUa--------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 101753 0.67 0.961114
Target:  5'- --gUCCAGCCCCgaggccaGGGUGauCUGcgGCGCc -3'
miRNA:   3'- cuaGGGUCGGGG-------CCUAU--GACuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 175143 0.67 0.957931
Target:  5'- --gCCUGGUCCCGGAaGCUGuuucggguCGCg -3'
miRNA:   3'- cuaGGGUCGGGGCCUaUGACuau-----GCG- -5'
14447 3' -54.5 NC_003521.1 + 135247 0.68 0.954189
Target:  5'- aGUUCUGGCCUCGGAUGCUc-UGCGa -3'
miRNA:   3'- cUAGGGUCGGGGCCUAUGAcuAUGCg -5'
14447 3' -54.5 NC_003521.1 + 69538 0.68 0.954189
Target:  5'- -cUUCCAGCCCacgCGGAUACa---GCGCa -3'
miRNA:   3'- cuAGGGUCGGG---GCCUAUGacuaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.