miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 3' -54.5 NC_003521.1 + 118139 0.68 0.937006
Target:  5'- ---aCCGGCCCCGcagcugucGGUGCUGG-GCGCc -3'
miRNA:   3'- cuagGGUCGGGGC--------CUAUGACUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 93678 0.68 0.94164
Target:  5'- uGUCCCGGaCCCCGGucgGCcuuUugGCu -3'
miRNA:   3'- cUAGGGUC-GGGGCCua-UGacuAugCG- -5'
14447 3' -54.5 NC_003521.1 + 151719 0.68 0.94164
Target:  5'- uGGUCCUcGUCCUGGcgGgUGAUGCGa -3'
miRNA:   3'- -CUAGGGuCGGGGCCuaUgACUAUGCg -5'
14447 3' -54.5 NC_003521.1 + 139076 0.68 0.946047
Target:  5'- --cCCUGGCCUCGGG-GCUGGacUACGUg -3'
miRNA:   3'- cuaGGGUCGGGGCCUaUGACU--AUGCG- -5'
14447 3' -54.5 NC_003521.1 + 11796 0.68 0.946047
Target:  5'- aGUCCCucgAGCCCCuagGGGUGCUGcaGUACu- -3'
miRNA:   3'- cUAGGG---UCGGGG---CCUAUGAC--UAUGcg -5'
14447 3' -54.5 NC_003521.1 + 176791 0.68 0.950229
Target:  5'- --cUCCAGCaCCUGGucgaUGGUGCGCu -3'
miRNA:   3'- cuaGGGUCG-GGGCCuaugACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 45187 0.68 0.950229
Target:  5'- -cUCCCuGGCCUCGGA-GCUGcagcaACGCg -3'
miRNA:   3'- cuAGGG-UCGGGGCCUaUGACua---UGCG- -5'
14447 3' -54.5 NC_003521.1 + 125510 0.68 0.950229
Target:  5'- --gCCCAGCgUCGuGGUGCUGAggaucggcaGCGCu -3'
miRNA:   3'- cuaGGGUCGgGGC-CUAUGACUa--------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 69538 0.68 0.954189
Target:  5'- -cUUCCAGCCCacgCGGAUACa---GCGCa -3'
miRNA:   3'- cuAGGGUCGGG---GCCUAUGacuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 135247 0.68 0.954189
Target:  5'- aGUUCUGGCCUCGGAUGCUc-UGCGa -3'
miRNA:   3'- cUAGGGUCGGGGCCUAUGAcuAUGCg -5'
14447 3' -54.5 NC_003521.1 + 175143 0.67 0.957931
Target:  5'- --gCCUGGUCCCGGAaGCUGuuucggguCGCg -3'
miRNA:   3'- cuaGGGUCGGGGCCUaUGACuau-----GCG- -5'
14447 3' -54.5 NC_003521.1 + 101753 0.67 0.961114
Target:  5'- --gUCCAGCCCCgaggccaGGGUGauCUGcgGCGCc -3'
miRNA:   3'- cuaGGGUCGGGG-------CCUAU--GACuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 113007 0.67 0.961458
Target:  5'- --aCCCgGGCaccuucgaCCGGcacGUGCUGGUGCGCc -3'
miRNA:   3'- cuaGGG-UCGg-------GGCC---UAUGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 235123 0.67 0.961458
Target:  5'- cGAUagaCAGCCCCcgGGAUGgUGAU-CGCc -3'
miRNA:   3'- -CUAgg-GUCGGGG--CCUAUgACUAuGCG- -5'
14447 3' -54.5 NC_003521.1 + 237423 0.67 0.961458
Target:  5'- --cCCCAuCCCCGGAUGCcg--GCGUc -3'
miRNA:   3'- cuaGGGUcGGGGCCUAUGacuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 30943 0.67 0.961458
Target:  5'- ---aCgAGCCCCGGAUagagACUGAcgggacucgGCGCu -3'
miRNA:   3'- cuagGgUCGGGGCCUA----UGACUa--------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 214511 0.67 0.961458
Target:  5'- ---gCCGGCCCUGGAaGCgcgGAcaGCGCg -3'
miRNA:   3'- cuagGGUCGGGGCCUaUGa--CUa-UGCG- -5'
14447 3' -54.5 NC_003521.1 + 116258 0.67 0.964774
Target:  5'- --aCCUGGCCUCGGAc-CUGAUcgugacguacguGCGCa -3'
miRNA:   3'- cuaGGGUCGGGGCCUauGACUA------------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 88957 0.67 0.967885
Target:  5'- ----aCAGCgCCCGGcgACUGAUcugcaGCGCc -3'
miRNA:   3'- cuaggGUCG-GGGCCuaUGACUA-----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 174135 0.67 0.967885
Target:  5'- gGGUCgCAGCCCaGGAggUACUGAgcaaagaccCGCa -3'
miRNA:   3'- -CUAGgGUCGGGgCCU--AUGACUau-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.