miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 3' -54.5 NC_003521.1 + 90139 1.11 0.005219
Target:  5'- gGAUCCCAGCCCCGGAUACUGAUACGCc -3'
miRNA:   3'- -CUAGGGUCGGGGCCUAUGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 29707 0.72 0.7898
Target:  5'- cGUCCuCGGCgCCUGGcUGCUGAgccucgGCGCg -3'
miRNA:   3'- cUAGG-GUCG-GGGCCuAUGACUa-----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 59630 0.72 0.798668
Target:  5'- -uUCCUggAGCCCCGGGUggACUucGUGCGCu -3'
miRNA:   3'- cuAGGG--UCGGGGCCUA--UGAc-UAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 111365 0.71 0.832613
Target:  5'- gGAUCCCGGCgCCGGGacuagcgGCgacgGAggggACGCg -3'
miRNA:   3'- -CUAGGGUCGgGGCCUa------UGa---CUa---UGCG- -5'
14447 3' -54.5 NC_003521.1 + 179064 0.71 0.832613
Target:  5'- cGGUCCCGGUgaCGGGgaacgGCUGAaaacUGCGCg -3'
miRNA:   3'- -CUAGGGUCGggGCCUa----UGACU----AUGCG- -5'
14447 3' -54.5 NC_003521.1 + 84431 0.71 0.856262
Target:  5'- --cCCCAGCCaaaCGGGg---GAUGCGCu -3'
miRNA:   3'- cuaGGGUCGGg--GCCUaugaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 77606 0.7 0.885047
Target:  5'- aGUCCCAgGCCgCCGGAgcUACUGc--CGCu -3'
miRNA:   3'- cUAGGGU-CGG-GGCCU--AUGACuauGCG- -5'
14447 3' -54.5 NC_003521.1 + 228072 0.7 0.88974
Target:  5'- gGGUCCCAGCUcacguccgaggcgCCGGAaaccucguccagGCUGuUGCGCg -3'
miRNA:   3'- -CUAGGGUCGG-------------GGCCUa-----------UGACuAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 195990 0.7 0.891718
Target:  5'- uGUCaCCAGCCCCaGGA-GCUGugGCGUg -3'
miRNA:   3'- cUAG-GGUCGGGG-CCUaUGACuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 91409 0.7 0.89817
Target:  5'- aAUCCCGGCCCacaGGGcgACc-GUGCGCa -3'
miRNA:   3'- cUAGGGUCGGGg--CCUa-UGacUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 139390 0.69 0.916183
Target:  5'- -cUCUUGGCCCCGcgguggucGAUGCUGAUgACGUu -3'
miRNA:   3'- cuAGGGUCGGGGC--------CUAUGACUA-UGCG- -5'
14447 3' -54.5 NC_003521.1 + 154641 0.69 0.916183
Target:  5'- --aCCguGgCCCGcGAgucGCUGGUGCGCa -3'
miRNA:   3'- cuaGGguCgGGGC-CUa--UGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 140084 0.69 0.921733
Target:  5'- --gCCCAGCUCgGGGUGCaucaucUGGUaGCGCu -3'
miRNA:   3'- cuaGGGUCGGGgCCUAUG------ACUA-UGCG- -5'
14447 3' -54.5 NC_003521.1 + 86324 0.69 0.921733
Target:  5'- ---gCCAGCaCCUGGAUGCUGGaggucuugccgGCGCc -3'
miRNA:   3'- cuagGGUCG-GGGCCUAUGACUa----------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 179190 0.69 0.927054
Target:  5'- cGGUCCCAGaaagCCGGAggcGCUGA-ACGUg -3'
miRNA:   3'- -CUAGGGUCgg--GGCCUa--UGACUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 119299 0.69 0.927054
Target:  5'- aGUUCUcGCCCguccaggugaggCGGAUGgUGAUGCGCa -3'
miRNA:   3'- cUAGGGuCGGG------------GCCUAUgACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 186334 0.69 0.927054
Target:  5'- -cUCCUAuGUCCCGGAUACUcaucGUACuGCg -3'
miRNA:   3'- cuAGGGU-CGGGGCCUAUGAc---UAUG-CG- -5'
14447 3' -54.5 NC_003521.1 + 107670 0.68 0.932145
Target:  5'- uGUCCCGGCUgcugCUGGuggugGUACUGGUACuGCu -3'
miRNA:   3'- cUAGGGUCGG----GGCC-----UAUGACUAUG-CG- -5'
14447 3' -54.5 NC_003521.1 + 46551 0.68 0.932145
Target:  5'- aGggCCUcGCgCCGGGUGCUGAaGCGg -3'
miRNA:   3'- -CuaGGGuCGgGGCCUAUGACUaUGCg -5'
14447 3' -54.5 NC_003521.1 + 47657 0.68 0.937006
Target:  5'- -cUCCCgccGGCuCCUGaGAUGCUG-UGCGCc -3'
miRNA:   3'- cuAGGG---UCG-GGGC-CUAUGACuAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.