Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14447 | 3' | -54.5 | NC_003521.1 | + | 235123 | 0.67 | 0.961458 |
Target: 5'- cGAUagaCAGCCCCcgGGAUGgUGAU-CGCc -3' miRNA: 3'- -CUAgg-GUCGGGG--CCUAUgACUAuGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 47657 | 0.68 | 0.937006 |
Target: 5'- -cUCCCgccGGCuCCUGaGAUGCUG-UGCGCc -3' miRNA: 3'- cuAGGG---UCG-GGGC-CUAUGACuAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 93678 | 0.68 | 0.94164 |
Target: 5'- uGUCCCGGaCCCCGGucgGCcuuUugGCu -3' miRNA: 3'- cUAGGGUC-GGGGCCua-UGacuAugCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 151719 | 0.68 | 0.94164 |
Target: 5'- uGGUCCUcGUCCUGGcgGgUGAUGCGa -3' miRNA: 3'- -CUAGGGuCGGGGCCuaUgACUAUGCg -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 139076 | 0.68 | 0.946047 |
Target: 5'- --cCCUGGCCUCGGG-GCUGGacUACGUg -3' miRNA: 3'- cuaGGGUCGGGGCCUaUGACU--AUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 125510 | 0.68 | 0.950229 |
Target: 5'- --gCCCAGCgUCGuGGUGCUGAggaucggcaGCGCu -3' miRNA: 3'- cuaGGGUCGgGGC-CUAUGACUa--------UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 69538 | 0.68 | 0.954189 |
Target: 5'- -cUUCCAGCCCacgCGGAUACa---GCGCa -3' miRNA: 3'- cuAGGGUCGGG---GCCUAUGacuaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 135247 | 0.68 | 0.954189 |
Target: 5'- aGUUCUGGCCUCGGAUGCUc-UGCGa -3' miRNA: 3'- cUAGGGUCGGGGCCUAUGAcuAUGCg -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 113007 | 0.67 | 0.961458 |
Target: 5'- --aCCCgGGCaccuucgaCCGGcacGUGCUGGUGCGCc -3' miRNA: 3'- cuaGGG-UCGg-------GGCC---UAUGACUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 46551 | 0.68 | 0.932145 |
Target: 5'- aGggCCUcGCgCCGGGUGCUGAaGCGg -3' miRNA: 3'- -CuaGGGuCGgGGCCUAUGACUaUGCg -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 179190 | 0.69 | 0.927054 |
Target: 5'- cGGUCCCAGaaagCCGGAggcGCUGA-ACGUg -3' miRNA: 3'- -CUAGGGUCgg--GGCCUa--UGACUaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 119299 | 0.69 | 0.927054 |
Target: 5'- aGUUCUcGCCCguccaggugaggCGGAUGgUGAUGCGCa -3' miRNA: 3'- cUAGGGuCGGG------------GCCUAUgACUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 111365 | 0.71 | 0.832613 |
Target: 5'- gGAUCCCGGCgCCGGGacuagcgGCgacgGAggggACGCg -3' miRNA: 3'- -CUAGGGUCGgGGCCUa------UGa---CUa---UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 84431 | 0.71 | 0.856262 |
Target: 5'- --cCCCAGCCaaaCGGGg---GAUGCGCu -3' miRNA: 3'- cuaGGGUCGGg--GCCUaugaCUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 228072 | 0.7 | 0.88974 |
Target: 5'- gGGUCCCAGCUcacguccgaggcgCCGGAaaccucguccagGCUGuUGCGCg -3' miRNA: 3'- -CUAGGGUCGG-------------GGCCUa-----------UGACuAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 195990 | 0.7 | 0.891718 |
Target: 5'- uGUCaCCAGCCCCaGGA-GCUGugGCGUg -3' miRNA: 3'- cUAG-GGUCGGGG-CCUaUGACuaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 91409 | 0.7 | 0.89817 |
Target: 5'- aAUCCCGGCCCacaGGGcgACc-GUGCGCa -3' miRNA: 3'- cUAGGGUCGGGg--CCUa-UGacUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 139390 | 0.69 | 0.916183 |
Target: 5'- -cUCUUGGCCCCGcgguggucGAUGCUGAUgACGUu -3' miRNA: 3'- cuAGGGUCGGGGC--------CUAUGACUA-UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 140084 | 0.69 | 0.921733 |
Target: 5'- --gCCCAGCUCgGGGUGCaucaucUGGUaGCGCu -3' miRNA: 3'- cuaGGGUCGGGgCCUAUG------ACUA-UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 186334 | 0.69 | 0.927054 |
Target: 5'- -cUCCUAuGUCCCGGAUACUcaucGUACuGCg -3' miRNA: 3'- cuAGGGU-CGGGGCCUAUGAc---UAUG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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