miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 3' -54.5 NC_003521.1 + 2455 0.66 0.976042
Target:  5'- cAUCCCcgcGCCCCGc-UAUgGGUACGCg -3'
miRNA:   3'- cUAGGGu--CGGGGCcuAUGaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 5833 0.66 0.973513
Target:  5'- gGGUCCCGGCgaCCGGGgccCUuuUAUGCg -3'
miRNA:   3'- -CUAGGGUCGg-GGCCUau-GAcuAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 11592 0.66 0.980562
Target:  5'- -cUCCgCGGCCCgCGGGUccACUGGcggguauCGCa -3'
miRNA:   3'- cuAGG-GUCGGG-GCCUA--UGACUau-----GCG- -5'
14447 3' -54.5 NC_003521.1 + 11796 0.68 0.946047
Target:  5'- aGUCCCucgAGCCCCuagGGGUGCUGcaGUACu- -3'
miRNA:   3'- cUAGGG---UCGGGG---CCUAUGAC--UAUGcg -5'
14447 3' -54.5 NC_003521.1 + 17517 0.66 0.978389
Target:  5'- -uUCCCGG-CCCGGcgGCgcggGAUucagccaguuGCGCg -3'
miRNA:   3'- cuAGGGUCgGGGCCuaUGa---CUA----------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 24794 0.67 0.970796
Target:  5'- --aCCCgcgacuGGCCCUGGGcccugcgcuUGCUGGUGgGCu -3'
miRNA:   3'- cuaGGG------UCGGGGCCU---------AUGACUAUgCG- -5'
14447 3' -54.5 NC_003521.1 + 28461 0.66 0.979279
Target:  5'- --aUCCAGCCUugggcggugcaccagCGGGUGgUGAUGgGCg -3'
miRNA:   3'- cuaGGGUCGGG---------------GCCUAUgACUAUgCG- -5'
14447 3' -54.5 NC_003521.1 + 29417 0.66 0.984413
Target:  5'- aGUCCgGGCCCCGGugacaGCUacaaccaGCGCg -3'
miRNA:   3'- cUAGGgUCGGGGCCua---UGAcua----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 29707 0.72 0.7898
Target:  5'- cGUCCuCGGCgCCUGGcUGCUGAgccucgGCGCg -3'
miRNA:   3'- cUAGG-GUCG-GGGCCuAUGACUa-----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 30943 0.67 0.961458
Target:  5'- ---aCgAGCCCCGGAUagagACUGAcgggacucgGCGCu -3'
miRNA:   3'- cuagGgUCGGGGCCUA----UGACUa--------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 38267 0.67 0.970796
Target:  5'- gGGUCagCAGCCCCaGGAgGCcGGcGCGCa -3'
miRNA:   3'- -CUAGg-GUCGGGG-CCUaUGaCUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 45187 0.68 0.950229
Target:  5'- -cUCCCuGGCCUCGGA-GCUGcagcaACGCg -3'
miRNA:   3'- cuAGGG-UCGGGGCCUaUGACua---UGCG- -5'
14447 3' -54.5 NC_003521.1 + 46551 0.68 0.932145
Target:  5'- aGggCCUcGCgCCGGGUGCUGAaGCGg -3'
miRNA:   3'- -CuaGGGuCGgGGCCUAUGACUaUGCg -5'
14447 3' -54.5 NC_003521.1 + 47657 0.68 0.937006
Target:  5'- -cUCCCgccGGCuCCUGaGAUGCUG-UGCGCc -3'
miRNA:   3'- cuAGGG---UCG-GGGC-CUAUGACuAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 59630 0.72 0.798668
Target:  5'- -uUCCUggAGCCCCGGGUggACUucGUGCGCu -3'
miRNA:   3'- cuAGGG--UCGGGGCCUA--UGAc-UAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 63542 0.66 0.975797
Target:  5'- uGggCCCAgcgucacggagccGCCCUcgucaccuggguGGAUgaGCUGAUGCGCc -3'
miRNA:   3'- -CuaGGGU-------------CGGGG------------CCUA--UGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 69538 0.68 0.954189
Target:  5'- -cUUCCAGCCCacgCGGAUACa---GCGCa -3'
miRNA:   3'- cuAGGGUCGGG---GCCUAUGacuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 77606 0.7 0.885047
Target:  5'- aGUCCCAgGCCgCCGGAgcUACUGc--CGCu -3'
miRNA:   3'- cUAGGGU-CGG-GGCCU--AUGACuauGCG- -5'
14447 3' -54.5 NC_003521.1 + 84431 0.71 0.856262
Target:  5'- --cCCCAGCCaaaCGGGg---GAUGCGCu -3'
miRNA:   3'- cuaGGGUCGGg--GCCUaugaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 86324 0.69 0.921733
Target:  5'- ---gCCAGCaCCUGGAUGCUGGaggucuugccgGCGCc -3'
miRNA:   3'- cuagGGUCG-GGGCCUAUGACUa----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.