miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14448 3' -57.8 NC_003521.1 + 90337 1.1 0.002744
Target:  5'- gGGUACGCCCCCUGGCAGGGCUAUACAc -3'
miRNA:   3'- -CCAUGCGGGGGACCGUCCCGAUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 90283 0.75 0.460179
Target:  5'- aGGUACGCCCCCguaGGgGGGGUa----- -3'
miRNA:   3'- -CCAUGCGGGGGa--CCgUCCCGauaugu -5'
14448 3' -57.8 NC_003521.1 + 197167 0.74 0.496554
Target:  5'- --cGCGCUgggCCUGGCAGGGCUGgagGCGg -3'
miRNA:   3'- ccaUGCGGg--GGACCGUCCCGAUa--UGU- -5'
14448 3' -57.8 NC_003521.1 + 171522 0.72 0.61194
Target:  5'- aGGacgGCGCCgCCCUGuGuCGGGGCUGcGCGc -3'
miRNA:   3'- -CCa--UGCGG-GGGAC-C-GUCCCGAUaUGU- -5'
14448 3' -57.8 NC_003521.1 + 232204 0.71 0.651357
Target:  5'- -aUGgGCCCCCgcgggUGGUGGuGGCUGUGCGg -3'
miRNA:   3'- ccAUgCGGGGG-----ACCGUC-CCGAUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 90022 0.71 0.651357
Target:  5'- cGGUccaGCGCCCCCUGGCGGcucGCg----- -3'
miRNA:   3'- -CCA---UGCGGGGGACCGUCc--CGauaugu -5'
14448 3' -57.8 NC_003521.1 + 90119 0.71 0.680794
Target:  5'- aGGUACGCCCCCUaGU-GGGCg----- -3'
miRNA:   3'- -CCAUGCGGGGGAcCGuCCCGauaugu -5'
14448 3' -57.8 NC_003521.1 + 45179 0.7 0.719486
Target:  5'- uGGUGCGaCUCCCUGGCcucGGaGCUGcaGCAa -3'
miRNA:   3'- -CCAUGC-GGGGGACCGu--CC-CGAUa-UGU- -5'
14448 3' -57.8 NC_003521.1 + 6162 0.69 0.757065
Target:  5'- --aGCaaCCCCUGGCGGGGCcagGCGc -3'
miRNA:   3'- ccaUGcgGGGGACCGUCCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 184847 0.69 0.757065
Target:  5'- cGGcUGCgGCCCCUgcacaucggcgUGGUGGGGCUGcACAc -3'
miRNA:   3'- -CC-AUG-CGGGGG-----------ACCGUCCCGAUaUGU- -5'
14448 3' -57.8 NC_003521.1 + 6536 0.69 0.757065
Target:  5'- cGGUcuGCGUCCCgCcccagGGCAGGGCg--ACGa -3'
miRNA:   3'- -CCA--UGCGGGG-Ga----CCGUCCCGauaUGU- -5'
14448 3' -57.8 NC_003521.1 + 177760 0.69 0.763488
Target:  5'- cGGUACGCugCCCgUGGCgcccaagauguacuGGGGCUGUu-- -3'
miRNA:   3'- -CCAUGCG--GGGgACCG--------------UCCCGAUAugu -5'
14448 3' -57.8 NC_003521.1 + 134244 0.69 0.775274
Target:  5'- --cGCGCCgCCCUcGGcCAGGGUgacccgGUGCAg -3'
miRNA:   3'- ccaUGCGG-GGGA-CC-GUCCCGa-----UAUGU- -5'
14448 3' -57.8 NC_003521.1 + 139062 0.68 0.810202
Target:  5'- --gGCGCCgcagaucaCCCUGGCcucGGGGCUGgacUACGu -3'
miRNA:   3'- ccaUGCGG--------GGGACCG---UCCCGAU---AUGU- -5'
14448 3' -57.8 NC_003521.1 + 20437 0.68 0.810202
Target:  5'- uGGgcaGCGUCUUCUGGCuGGGCUucccGCAg -3'
miRNA:   3'- -CCa--UGCGGGGGACCGuCCCGAua--UGU- -5'
14448 3' -57.8 NC_003521.1 + 101016 0.68 0.818578
Target:  5'- aGGgGCGCgUCCUGGCGGGcacGCccGUGCAg -3'
miRNA:   3'- -CCaUGCGgGGGACCGUCC---CGa-UAUGU- -5'
14448 3' -57.8 NC_003521.1 + 60266 0.68 0.834852
Target:  5'- cGUG-GCCCacgaCCUGGUGGGGCUAgGCu -3'
miRNA:   3'- cCAUgCGGG----GGACCGUCCCGAUaUGu -5'
14448 3' -57.8 NC_003521.1 + 115362 0.67 0.850443
Target:  5'- aGGUcACGCgUCgCUGGcCAGGGCcggcaUGUGCAg -3'
miRNA:   3'- -CCA-UGCGgGG-GACC-GUCCCG-----AUAUGU- -5'
14448 3' -57.8 NC_003521.1 + 112462 0.67 0.857965
Target:  5'- uGGUggGCGCgCCC-GGCGGGGCcaccUACu -3'
miRNA:   3'- -CCA--UGCGgGGGaCCGUCCCGau--AUGu -5'
14448 3' -57.8 NC_003521.1 + 109509 0.67 0.857965
Target:  5'- uGGUcGCGCCggCCgCUGcucgaGCAGGGCgUGUACAg -3'
miRNA:   3'- -CCA-UGCGG--GG-GAC-----CGUCCCG-AUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.