Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14448 | 3' | -57.8 | NC_003521.1 | + | 119823 | 0.66 | 0.910931 |
Target: 5'- uGGUGCGCacgCCCCagUGGUA-GGCgGUGCGu -3' miRNA: 3'- -CCAUGCG---GGGG--ACCGUcCCGaUAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 115362 | 0.67 | 0.850443 |
Target: 5'- aGGUcACGCgUCgCUGGcCAGGGCcggcaUGUGCAg -3' miRNA: 3'- -CCA-UGCGgGG-GACC-GUCCCG-----AUAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 109509 | 0.67 | 0.857965 |
Target: 5'- uGGUcGCGCCggCCgCUGcucgaGCAGGGCgUGUACAg -3' miRNA: 3'- -CCA-UGCGG--GG-GAC-----CGUCCCG-AUAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 112462 | 0.67 | 0.857965 |
Target: 5'- uGGUggGCGCgCCC-GGCGGGGCcaccUACu -3' miRNA: 3'- -CCA--UGCGgGGGaCCGUCCCGau--AUGu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 115247 | 0.67 | 0.872437 |
Target: 5'- uGUGCGCCgCCgUGGUcgGGGGCagcAUGCc -3' miRNA: 3'- cCAUGCGG-GGgACCG--UCCCGa--UAUGu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 149649 | 0.67 | 0.879376 |
Target: 5'- aGGUGC-UCUCCUGGUGcGGGCUGcccgACAu -3' miRNA: 3'- -CCAUGcGGGGGACCGU-CCCGAUa---UGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 68241 | 0.66 | 0.89895 |
Target: 5'- cGGUACGUUCaCCUGGCGGuGCg--ACc -3' miRNA: 3'- -CCAUGCGGG-GGACCGUCcCGauaUGu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 209543 | 0.66 | 0.89895 |
Target: 5'- cGGuUAUGCgCCC-GGCGGGGUg--GCGg -3' miRNA: 3'- -CC-AUGCGgGGGaCCGUCCCGauaUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 217190 | 0.66 | 0.90505 |
Target: 5'- cGGUccAUGCCgCCCaGGCAGgccacGGCgGUGCAg -3' miRNA: 3'- -CCA--UGCGG-GGGaCCGUC-----CCGaUAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 60266 | 0.68 | 0.834852 |
Target: 5'- cGUG-GCCCacgaCCUGGUGGGGCUAgGCu -3' miRNA: 3'- cCAUgCGGG----GGACCGUCCCGAUaUGu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 101016 | 0.68 | 0.818578 |
Target: 5'- aGGgGCGCgUCCUGGCGGGcacGCccGUGCAg -3' miRNA: 3'- -CCaUGCGgGGGACCGUCC---CGa-UAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 139062 | 0.68 | 0.810202 |
Target: 5'- --gGCGCCgcagaucaCCCUGGCcucGGGGCUGgacUACGu -3' miRNA: 3'- ccaUGCGG--------GGGACCG---UCCCGAU---AUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 90283 | 0.75 | 0.460179 |
Target: 5'- aGGUACGCCCCCguaGGgGGGGUa----- -3' miRNA: 3'- -CCAUGCGGGGGa--CCgUCCCGauaugu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 197167 | 0.74 | 0.496554 |
Target: 5'- --cGCGCUgggCCUGGCAGGGCUGgagGCGg -3' miRNA: 3'- ccaUGCGGg--GGACCGUCCCGAUa--UGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 90022 | 0.71 | 0.651357 |
Target: 5'- cGGUccaGCGCCCCCUGGCGGcucGCg----- -3' miRNA: 3'- -CCA---UGCGGGGGACCGUCc--CGauaugu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 232204 | 0.71 | 0.651357 |
Target: 5'- -aUGgGCCCCCgcgggUGGUGGuGGCUGUGCGg -3' miRNA: 3'- ccAUgCGGGGG-----ACCGUC-CCGAUAUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 90119 | 0.71 | 0.680794 |
Target: 5'- aGGUACGCCCCCUaGU-GGGCg----- -3' miRNA: 3'- -CCAUGCGGGGGAcCGuCCCGauaugu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 6162 | 0.69 | 0.757065 |
Target: 5'- --aGCaaCCCCUGGCGGGGCcagGCGc -3' miRNA: 3'- ccaUGcgGGGGACCGUCCCGauaUGU- -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 177760 | 0.69 | 0.763488 |
Target: 5'- cGGUACGCugCCCgUGGCgcccaagauguacuGGGGCUGUu-- -3' miRNA: 3'- -CCAUGCG--GGGgACCG--------------UCCCGAUAugu -5' |
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14448 | 3' | -57.8 | NC_003521.1 | + | 134244 | 0.69 | 0.775274 |
Target: 5'- --cGCGCCgCCCUcGGcCAGGGUgacccgGUGCAg -3' miRNA: 3'- ccaUGCGG-GGGA-CC-GUCCCGa-----UAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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