miRNA display CGI


Results 21 - 40 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 175197 0.66 0.859459
Target:  5'- -gGCgCGCGucagcuCCUCgCGGGCCGUguuuagCUGCu -3'
miRNA:   3'- ggUGgGCGCu-----GGAG-GCCUGGCA------GACG- -5'
14452 3' -60.1 NC_003521.1 + 164661 0.66 0.859459
Target:  5'- -gGCCCGCGAcaCCUguacCUGcGCCGUgUGCg -3'
miRNA:   3'- ggUGGGCGCU--GGA----GGCcUGGCAgACG- -5'
14452 3' -60.1 NC_003521.1 + 118184 0.66 0.879948
Target:  5'- aCGCCCGcCGGCaaagUCgGGGCCGcCgaGCg -3'
miRNA:   3'- gGUGGGC-GCUGg---AGgCCUGGCaGa-CG- -5'
14452 3' -60.1 NC_003521.1 + 52312 0.66 0.882555
Target:  5'- -gGCCCGcCGGCCUCCucguaucucggcggcGGACCcaggcccacgGcCUGCu -3'
miRNA:   3'- ggUGGGC-GCUGGAGG---------------CCUGG----------CaGACG- -5'
14452 3' -60.1 NC_003521.1 + 98508 0.66 0.858035
Target:  5'- gCACCCaguuGCGACgacgcgcgcggCUGGGCCG-CUGCa -3'
miRNA:   3'- gGUGGG----CGCUGga---------GGCCUGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 149390 0.66 0.873302
Target:  5'- aCC-CCCGUGGgCUUCGuGGCCGUg-GCc -3'
miRNA:   3'- -GGuGGGCGCUgGAGGC-CUGGCAgaCG- -5'
14452 3' -60.1 NC_003521.1 + 196061 0.66 0.886406
Target:  5'- gCACCgGCcGCCUUccgCGGuCCGUCUcgGCg -3'
miRNA:   3'- gGUGGgCGcUGGAG---GCCuGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 43188 0.66 0.884489
Target:  5'- gCCA-CCGCGACCUgugcaacgugcucaUCGGcCUG-CUGCa -3'
miRNA:   3'- -GGUgGGCGCUGGA--------------GGCCuGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 202546 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 120280 0.66 0.879948
Target:  5'- uCC-CCCGgGACCgCCGG-CCGcCgaggGCc -3'
miRNA:   3'- -GGuGGGCgCUGGaGGCCuGGCaGa---CG- -5'
14452 3' -60.1 NC_003521.1 + 233713 0.66 0.873302
Target:  5'- uCCACCUcaGCGGCCUggagaaggaGGACgccgccgccgCGUCUGCu -3'
miRNA:   3'- -GGUGGG--CGCUGGAgg-------CCUG----------GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 105210 0.66 0.886406
Target:  5'- uCCGCCCGCGAgCUgCGcGgCGUCa-- -3'
miRNA:   3'- -GGUGGGCGCUgGAgGCcUgGCAGacg -5'
14452 3' -60.1 NC_003521.1 + 198625 0.66 0.859459
Target:  5'- aCAgCCGCuGGCCcagggaaacgCCGuGCUGUCUGCa -3'
miRNA:   3'- gGUgGGCG-CUGGa---------GGCcUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 130154 0.66 0.859459
Target:  5'- gCCACCgacgCGCuGGCCgaCCGGGCCGUgaccgUGCc -3'
miRNA:   3'- -GGUGG----GCG-CUGGa-GGCCUGGCAg----ACG- -5'
14452 3' -60.1 NC_003521.1 + 110875 0.66 0.892671
Target:  5'- gCgGCCCGCGGCagaaCUGcGCCGUCUcgGCc -3'
miRNA:   3'- -GgUGGGCGCUGga--GGCcUGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 200670 0.66 0.892671
Target:  5'- aCGCCUGCG-CUUCUc-GCCGUUUGCc -3'
miRNA:   3'- gGUGGGCGCuGGAGGccUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 171099 0.66 0.886406
Target:  5'- cCCGCCCgccguuaccGCGuACCUCaGGGCCG-CcGCc -3'
miRNA:   3'- -GGUGGG---------CGC-UGGAGgCCUGGCaGaCG- -5'
14452 3' -60.1 NC_003521.1 + 120935 0.66 0.864386
Target:  5'- cCCACCCGCGgggcgacgaggagaACCgacugCGGACCGag-GCc -3'
miRNA:   3'- -GGUGGGCGC--------------UGGag---GCCUGGCagaCG- -5'
14452 3' -60.1 NC_003521.1 + 2318 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 103958 0.66 0.885769
Target:  5'- gCCACCCGCcGCgagUCCGuGCauuucugCGUCUGCa -3'
miRNA:   3'- -GGUGGGCGcUGg--AGGCcUG-------GCAGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.