miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 45105 0.66 0.866471
Target:  5'- cCCAgCCGCuACCUgCGGcGCCGUaUGUu -3'
miRNA:   3'- -GGUgGGCGcUGGAgGCC-UGGCAgACG- -5'
14452 3' -60.1 NC_003521.1 + 223042 0.66 0.879948
Target:  5'- gCACgCCGaCGGCCUCCaGGucAUCGUCacaGCa -3'
miRNA:   3'- gGUG-GGC-GCUGGAGG-CC--UGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 143971 0.66 0.866471
Target:  5'- aCCACCCG-GcCUUCCGccccauGCCG-CUGCa -3'
miRNA:   3'- -GGUGGGCgCuGGAGGCc-----UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 42951 0.66 0.877974
Target:  5'- gCCGCCugcagcccagcgagCGCGACCcgCCGGcgcccACCGacgacCUGCa -3'
miRNA:   3'- -GGUGG--------------GCGCUGGa-GGCC-----UGGCa----GACG- -5'
14452 3' -60.1 NC_003521.1 + 117370 0.66 0.857321
Target:  5'- gCCaACCCGCGguccccgcuacggcGCCUCCGuccuaucccGCCGUCggUGCc -3'
miRNA:   3'- -GG-UGGGCGC--------------UGGAGGCc--------UGGCAG--ACG- -5'
14452 3' -60.1 NC_003521.1 + 77460 0.66 0.866471
Target:  5'- -uGCCCGUGACaCUgCCGccGCCG-CUGCu -3'
miRNA:   3'- ggUGGGCGCUG-GA-GGCc-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 164365 0.66 0.866471
Target:  5'- aCCGCCacaGCGACCUCCaGcGACgGUa--- -3'
miRNA:   3'- -GGUGGg--CGCUGGAGG-C-CUGgCAgacg -5'
14452 3' -60.1 NC_003521.1 + 102446 0.66 0.873302
Target:  5'- gCCGCaggCCGCGGCagaUCuCGaaGACCGUgUGCu -3'
miRNA:   3'- -GGUG---GGCGCUGg--AG-GC--CUGGCAgACG- -5'
14452 3' -60.1 NC_003521.1 + 129707 0.66 0.879292
Target:  5'- aCGCCCGCuucugccGGCCg-CGGcCCGUCgacGCg -3'
miRNA:   3'- gGUGGGCG-------CUGGagGCCuGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 110875 0.66 0.892671
Target:  5'- gCgGCCCGCGGCagaaCUGcGCCGUCUcgGCc -3'
miRNA:   3'- -GgUGGGCGCUGga--GGCcUGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 211580 0.66 0.879948
Target:  5'- aCGCUCGCGGCgguguccCCGGAgaCGUcCUGCa -3'
miRNA:   3'- gGUGGGCGCUGga-----GGCCUg-GCA-GACG- -5'
14452 3' -60.1 NC_003521.1 + 202546 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 233713 0.66 0.873302
Target:  5'- uCCACCUcaGCGGCCUggagaaggaGGACgccgccgccgCGUCUGCu -3'
miRNA:   3'- -GGUGGG--CGCUGGAgg-------CCUG----------GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 226839 0.66 0.858748
Target:  5'- cUCGCCCGCcGCCgcgCCGGGCaggcccaucagggCGUCcaGCg -3'
miRNA:   3'- -GGUGGGCGcUGGa--GGCCUG-------------GCAGa-CG- -5'
14452 3' -60.1 NC_003521.1 + 131471 0.66 0.859459
Target:  5'- uCgGCCuCGuCGGCCUCCuGcGCCGgCUGCu -3'
miRNA:   3'- -GgUGG-GC-GCUGGAGGcC-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 4446 0.66 0.866471
Target:  5'- aCGCCCgagGCGAUCUgaaGGcACCGcCUGCg -3'
miRNA:   3'- gGUGGG---CGCUGGAgg-CC-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 43402 0.66 0.859459
Target:  5'- cUCGCCCGCGcCCUCCccuuCCuaCUGCg -3'
miRNA:   3'- -GGUGGGCGCuGGAGGccu-GGcaGACG- -5'
14452 3' -60.1 NC_003521.1 + 140442 0.66 0.873302
Target:  5'- uUCuCCC-CGGCCUCCGuGCCGUCc-- -3'
miRNA:   3'- -GGuGGGcGCUGGAGGCcUGGCAGacg -5'
14452 3' -60.1 NC_003521.1 + 120280 0.66 0.879948
Target:  5'- uCC-CCCGgGACCgCCGG-CCGcCgaggGCc -3'
miRNA:   3'- -GGuGGGCgCUGGaGGCCuGGCaGa---CG- -5'
14452 3' -60.1 NC_003521.1 + 149390 0.66 0.873302
Target:  5'- aCC-CCCGUGGgCUUCGuGGCCGUg-GCc -3'
miRNA:   3'- -GGuGGGCGCUgGAGGC-CUGGCAgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.