miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 132260 0.7 0.690406
Target:  5'- aCCACCUGgGccgcaacgccaACCUCUuGACCGUgUGCc -3'
miRNA:   3'- -GGUGGGCgC-----------UGGAGGcCUGGCAgACG- -5'
14452 3' -60.1 NC_003521.1 + 75970 0.71 0.614891
Target:  5'- aCACCCccgacgaggaGCGGCCcucgCCGGgcGCCGUCaGCa -3'
miRNA:   3'- gGUGGG----------CGCUGGa---GGCC--UGGCAGaCG- -5'
14452 3' -60.1 NC_003521.1 + 164449 0.71 0.614891
Target:  5'- aCCGCggCCGCGGCCgUCaCGGucGCCG-CUGCc -3'
miRNA:   3'- -GGUG--GGCGCUGG-AG-GCC--UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 76275 0.71 0.633829
Target:  5'- gCCGCCUGCGAgaCCUCgCGG-UCGUCgaagaGCa -3'
miRNA:   3'- -GGUGGGCGCU--GGAG-GCCuGGCAGa----CG- -5'
14452 3' -60.1 NC_003521.1 + 28318 0.71 0.643299
Target:  5'- gCgACCCcggcGCGGCCUgCGGACCGcCggugGCc -3'
miRNA:   3'- -GgUGGG----CGCUGGAgGCCUGGCaGa---CG- -5'
14452 3' -60.1 NC_003521.1 + 138058 0.71 0.643299
Target:  5'- gUCGCCCGCGACCgccgCGGACag-CUGa -3'
miRNA:   3'- -GGUGGGCGCUGGag--GCCUGgcaGACg -5'
14452 3' -60.1 NC_003521.1 + 149639 0.7 0.652762
Target:  5'- gCCGCCgGCGAggugcUCUCCuGGugCGggCUGCc -3'
miRNA:   3'- -GGUGGgCGCU-----GGAGG-CCugGCa-GACG- -5'
14452 3' -60.1 NC_003521.1 + 92337 0.7 0.662211
Target:  5'- uCCGCCCGCcucGCUcCCGGAacccuCCGUcCUGCc -3'
miRNA:   3'- -GGUGGGCGc--UGGaGGCCU-----GGCA-GACG- -5'
14452 3' -60.1 NC_003521.1 + 104027 0.7 0.689471
Target:  5'- uUCACCagcaggggguacaCGCaGugCUCCGacGCCGUCUGCg -3'
miRNA:   3'- -GGUGG-------------GCG-CugGAGGCc-UGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 225589 0.72 0.586581
Target:  5'- gCGCUCgGCGGCCUCgCGcucGGCCGcCUGCa -3'
miRNA:   3'- gGUGGG-CGCUGGAG-GC---CUGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 120596 0.72 0.577194
Target:  5'- gCCGCCgGCu-CCUgCCGGuAgCGUCUGCg -3'
miRNA:   3'- -GGUGGgCGcuGGA-GGCC-UgGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 111638 0.72 0.577194
Target:  5'- aCCGCCgGCGAaacccaaaCCgCCGcacGCCGUCUGCu -3'
miRNA:   3'- -GGUGGgCGCU--------GGaGGCc--UGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 124135 0.78 0.276455
Target:  5'- cCCGCCCGCGccgcuGCCUCCGccGCCG-CUGCc -3'
miRNA:   3'- -GGUGGGCGC-----UGGAGGCc-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 29493 0.75 0.410092
Target:  5'- aCCACUCGCGcCCgCgGGACCGcCUGUu -3'
miRNA:   3'- -GGUGGGCGCuGGaGgCCUGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 43862 0.75 0.418157
Target:  5'- gCGCCC-CGGCCggcucCCGGGCCGUC-GCc -3'
miRNA:   3'- gGUGGGcGCUGGa----GGCCUGGCAGaCG- -5'
14452 3' -60.1 NC_003521.1 + 152179 0.74 0.434573
Target:  5'- gCAUCgGCGACU---GGACCGUCUGCa -3'
miRNA:   3'- gGUGGgCGCUGGaggCCUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 201309 0.74 0.434573
Target:  5'- cUCGCCgCGCGACCcCUGGAUCGUgCUGg -3'
miRNA:   3'- -GGUGG-GCGCUGGaGGCCUGGCA-GACg -5'
14452 3' -60.1 NC_003521.1 + 223597 0.72 0.54003
Target:  5'- uCCACCU-CGGCCUCCGaGAccucggccuCCGUCUGg -3'
miRNA:   3'- -GGUGGGcGCUGGAGGC-CU---------GGCAGACg -5'
14452 3' -60.1 NC_003521.1 + 82761 0.72 0.56784
Target:  5'- aUCACgCGCGACCggCGGGCCGUggaGCa -3'
miRNA:   3'- -GGUGgGCGCUGGagGCCUGGCAga-CG- -5'
14452 3' -60.1 NC_003521.1 + 181315 0.72 0.56784
Target:  5'- gCCGCCCGCgGGCCa--GGgcGCCGUCUGg -3'
miRNA:   3'- -GGUGGGCG-CUGGaggCC--UGGCAGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.