miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 443 0.66 0.892671
Target:  5'- aCGCCUGCG-CUUCUc-GCCGUUUGCc -3'
miRNA:   3'- gGUGGGCGCuGGAGGccUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 1081 0.74 0.434573
Target:  5'- cUCGCCgCGCGACCcCUGGAUCGUgCUGg -3'
miRNA:   3'- -GGUGG-GCGCUGGaGGCCUGGCA-GACg -5'
14452 3' -60.1 NC_003521.1 + 1785 0.67 0.821866
Target:  5'- aCgGCgCCGCGACCaggUCCGGGgguCCGgcgaaUGCa -3'
miRNA:   3'- -GgUG-GGCGCUGG---AGGCCU---GGCag---ACG- -5'
14452 3' -60.1 NC_003521.1 + 2318 0.66 0.873302
Target:  5'- aCCugCUGCGcgccgGCCUCCugGGGCUG-CUGa -3'
miRNA:   3'- -GGugGGCGC-----UGGAGG--CCUGGCaGACg -5'
14452 3' -60.1 NC_003521.1 + 2365 0.68 0.780591
Target:  5'- uCCGCCC-CGcCCgCCGaGGCCGccCUGCg -3'
miRNA:   3'- -GGUGGGcGCuGGaGGC-CUGGCa-GACG- -5'
14452 3' -60.1 NC_003521.1 + 4446 0.66 0.866471
Target:  5'- aCGCCCgagGCGAUCUgaaGGcACCGcCUGCg -3'
miRNA:   3'- gGUGGG---CGCUGGAgg-CC-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 6519 0.67 0.81388
Target:  5'- cUCACCgGUGACga--GGGCgGUCUGCg -3'
miRNA:   3'- -GGUGGgCGCUGgaggCCUGgCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 6698 0.66 0.886406
Target:  5'- gCGCCCGCGAgCgcugCUGGgucucGCCGUggUGCa -3'
miRNA:   3'- gGUGGGCGCUgGa---GGCC-----UGGCAg-ACG- -5'
14452 3' -60.1 NC_003521.1 + 11539 0.7 0.69973
Target:  5'- gCGCCaguccuauCGCuacGCCUCCGGcGCCGUCgUGCg -3'
miRNA:   3'- gGUGG--------GCGc--UGGAGGCC-UGGCAG-ACG- -5'
14452 3' -60.1 NC_003521.1 + 11853 0.68 0.805753
Target:  5'- gCCGCCCGCGcACCUCCucGGACg------ -3'
miRNA:   3'- -GGUGGGCGC-UGGAGG--CCUGgcagacg -5'
14452 3' -60.1 NC_003521.1 + 12683 0.71 0.643299
Target:  5'- -uGCgCCGCGACCgguucuacUCCaGGACCGacggCUGCu -3'
miRNA:   3'- ggUG-GGCGCUGG--------AGG-CCUGGCa---GACG- -5'
14452 3' -60.1 NC_003521.1 + 13734 0.66 0.886406
Target:  5'- aCCGCUCaGUGGCU--CGGACCGUCaucugucucgacUGCg -3'
miRNA:   3'- -GGUGGG-CGCUGGagGCCUGGCAG------------ACG- -5'
14452 3' -60.1 NC_003521.1 + 14346 0.67 0.837388
Target:  5'- aCACCCGCGACCaguacCUGGuGCUGgugGCc -3'
miRNA:   3'- gGUGGGCGCUGGa----GGCC-UGGCagaCG- -5'
14452 3' -60.1 NC_003521.1 + 16805 0.76 0.342046
Target:  5'- cCCGCCC-CGACCgCCGGGCCcgccgCUGCc -3'
miRNA:   3'- -GGUGGGcGCUGGaGGCCUGGca---GACG- -5'
14452 3' -60.1 NC_003521.1 + 17341 0.67 0.829704
Target:  5'- uCCGCCC-C-ACCUcCCGGGCCGUgaCgccgGCg -3'
miRNA:   3'- -GGUGGGcGcUGGA-GGCCUGGCA--Ga---CG- -5'
14452 3' -60.1 NC_003521.1 + 18540 0.69 0.73647
Target:  5'- uCCACCCG-GGuuUCUGGAUCuuucUCUGCg -3'
miRNA:   3'- -GGUGGGCgCUggAGGCCUGGc---AGACG- -5'
14452 3' -60.1 NC_003521.1 + 22442 0.67 0.829704
Target:  5'- aCCGCCCGCG-CUUCaCGcGGCaCGcCUGg -3'
miRNA:   3'- -GGUGGGCGCuGGAG-GC-CUG-GCaGACg -5'
14452 3' -60.1 NC_003521.1 + 23070 0.71 0.595997
Target:  5'- uCCACCCGCGucuguggugucuGCgUCCGuGGCCGg--GCg -3'
miRNA:   3'- -GGUGGGCGC------------UGgAGGC-CUGGCagaCG- -5'
14452 3' -60.1 NC_003521.1 + 23627 0.68 0.771966
Target:  5'- aCCG-CCGUGGCCUgCCugggcggcauGGACCGUCgucguugGCa -3'
miRNA:   3'- -GGUgGGCGCUGGA-GG----------CCUGGCAGa------CG- -5'
14452 3' -60.1 NC_003521.1 + 24701 0.74 0.459879
Target:  5'- cUCugCCGCGGCCUCCGcGCCG-C-GCu -3'
miRNA:   3'- -GGugGGCGCUGGAGGCcUGGCaGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.