Results 1 - 20 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14452 | 3' | -60.1 | NC_003521.1 | + | 92726 | 1.11 | 0.001876 |
Target: 5'- uCCACCCGCGACCUCCGGACCGUCUGCc -3' miRNA: 3'- -GGUGGGCGCUGGAGGCCUGGCAGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 72154 | 0.83 | 0.149103 |
Target: 5'- gCCACCaGgGACCUCCGGcGCCGUCgGCa -3' miRNA: 3'- -GGUGGgCgCUGGAGGCC-UGGCAGaCG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 124135 | 0.78 | 0.276455 |
Target: 5'- cCCGCCCGCGccgcuGCCUCCGccGCCG-CUGCc -3' miRNA: 3'- -GGUGGGCGC-----UGGAGGCc-UGGCaGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 30841 | 0.77 | 0.314531 |
Target: 5'- aCGCUgGUGGCCgUCUGGGCCGUCcGCg -3' miRNA: 3'- gGUGGgCGCUGG-AGGCCUGGCAGaCG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 16805 | 0.76 | 0.342046 |
Target: 5'- cCCGCCC-CGACCgCCGGGCCcgccgCUGCc -3' miRNA: 3'- -GGUGGGcGCUGGaGGCCUGGca---GACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 138384 | 0.75 | 0.402125 |
Target: 5'- aUCugCCGCGGCCUgCGG-CgCGUCUGg -3' miRNA: 3'- -GGugGGCGCUGGAgGCCuG-GCAGACg -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 29493 | 0.75 | 0.410092 |
Target: 5'- aCCACUCGCGcCCgCgGGACCGcCUGUu -3' miRNA: 3'- -GGUGGGCGCuGGaGgCCUGGCaGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 43862 | 0.75 | 0.418157 |
Target: 5'- gCGCCC-CGGCCggcucCCGGGCCGUC-GCc -3' miRNA: 3'- gGUGGGcGCUGGa----GGCCUGGCAGaCG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 201309 | 0.74 | 0.434573 |
Target: 5'- cUCGCCgCGCGACCcCUGGAUCGUgCUGg -3' miRNA: 3'- -GGUGG-GCGCUGGaGGCCUGGCA-GACg -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 152179 | 0.74 | 0.434573 |
Target: 5'- gCAUCgGCGACU---GGACCGUCUGCa -3' miRNA: 3'- gGUGGgCGCUGGaggCCUGGCAGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 1081 | 0.74 | 0.434573 |
Target: 5'- cUCGCCgCGCGACCcCUGGAUCGUgCUGg -3' miRNA: 3'- -GGUGG-GCGCUGGaGGCCUGGCA-GACg -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 206663 | 0.74 | 0.451356 |
Target: 5'- -gGCCCGCGACCUCaaGGCCuUCgUGCg -3' miRNA: 3'- ggUGGGCGCUGGAGgcCUGGcAG-ACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 171918 | 0.74 | 0.459879 |
Target: 5'- cUCGCCCcCGACCUCUGuGCCGaUCUGUc -3' miRNA: 3'- -GGUGGGcGCUGGAGGCcUGGC-AGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 24701 | 0.74 | 0.459879 |
Target: 5'- cUCugCCGCGGCCUCCGcGCCG-C-GCu -3' miRNA: 3'- -GGugGGCGCUGGAGGCcUGGCaGaCG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 138026 | 0.74 | 0.468487 |
Target: 5'- gCCGCCCgagcugGCGGCCgCCGGcGCCGUCaucGCg -3' miRNA: 3'- -GGUGGG------CGCUGGaGGCC-UGGCAGa--CG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 205859 | 0.74 | 0.468487 |
Target: 5'- gCGCCCGCGAUCUggCC-GACC-UCUGCg -3' miRNA: 3'- gGUGGGCGCUGGA--GGcCUGGcAGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 135035 | 0.73 | 0.483307 |
Target: 5'- -gGCCUGCGucacggugguuaacGCCUCgGGcaccACCGUCUGCa -3' miRNA: 3'- ggUGGGCGC--------------UGGAGgCC----UGGCAGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 35614 | 0.73 | 0.494791 |
Target: 5'- uCCGCCUGCcggcccuggacgGGCCUCCGGACCcUCa-- -3' miRNA: 3'- -GGUGGGCG------------CUGGAGGCCUGGcAGacg -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 193282 | 0.73 | 0.502814 |
Target: 5'- cCCGCUCGacauggaCGACCUCCGGGacaCG-CUGCu -3' miRNA: 3'- -GGUGGGC-------GCUGGAGGCCUg--GCaGACG- -5' |
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14452 | 3' | -60.1 | NC_003521.1 | + | 24792 | 0.73 | 0.521747 |
Target: 5'- uUACCCGCGACUggccCUGGGCC--CUGCg -3' miRNA: 3'- gGUGGGCGCUGGa---GGCCUGGcaGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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