miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 5' -59.6 NC_003521.1 + 92760 1.04 0.004097
Target:  5'- uAUACGCACAUCCCGGGCACCCCAGAUa -3'
miRNA:   3'- -UAUGCGUGUAGGGCCCGUGGGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 188696 0.76 0.305122
Target:  5'- gAUACGCGgGUCCCGuGGCGCCCauuGGUa -3'
miRNA:   3'- -UAUGCGUgUAGGGC-CCGUGGGgu-CUA- -5'
14452 5' -59.6 NC_003521.1 + 228253 0.75 0.34054
Target:  5'- cAUGCGgACAacgCCCGGGCAUCuCCAGAc -3'
miRNA:   3'- -UAUGCgUGUa--GGGCCCGUGG-GGUCUa -5'
14452 5' -59.6 NC_003521.1 + 88461 0.75 0.34054
Target:  5'- -gGCGCGCcgCCCcGGCcgGCCCCAGAg -3'
miRNA:   3'- uaUGCGUGuaGGGcCCG--UGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 203426 0.74 0.363178
Target:  5'- --uCGCACAaggCCCGGGCGCCCCc--- -3'
miRNA:   3'- uauGCGUGUa--GGGCCCGUGGGGucua -5'
14452 5' -59.6 NC_003521.1 + 160255 0.71 0.509521
Target:  5'- -cGCGCGCGcuucUCCCGGGUugCCUGGu- -3'
miRNA:   3'- uaUGCGUGU----AGGGCCCGugGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 11504 0.71 0.537978
Target:  5'- uAUGuCGCGCA-CCCGGGCAUUaCCAGAc -3'
miRNA:   3'- -UAU-GCGUGUaGGGCCCGUGG-GGUCUa -5'
14452 5' -59.6 NC_003521.1 + 47570 0.7 0.566961
Target:  5'- --cCGCAgccgaccgUAUCCgGGGUACCCCAGGc -3'
miRNA:   3'- uauGCGU--------GUAGGgCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 134054 0.7 0.576714
Target:  5'- -cACGCcuggguuucgACcgCCUGGGCGCCCUGGAc -3'
miRNA:   3'- uaUGCG----------UGuaGGGCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 27420 0.7 0.596326
Target:  5'- gAUGCGCACGUaggccUCCaGGCAgCCCAGGc -3'
miRNA:   3'- -UAUGCGUGUA-----GGGcCCGUgGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 65024 0.7 0.615048
Target:  5'- -cACGCGCAUCCUGGcccgcguGCAgCCCCGGc- -3'
miRNA:   3'- uaUGCGUGUAGGGCC-------CGU-GGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 235098 0.7 0.616035
Target:  5'- -cACGCGCcgugCCCGGGCcguacacauaACCCCGGu- -3'
miRNA:   3'- uaUGCGUGua--GGGCCCG----------UGGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 129021 0.7 0.616035
Target:  5'- ---gGCGCcgCCagaGGGCACCCgCAGAa -3'
miRNA:   3'- uaugCGUGuaGGg--CCCGUGGG-GUCUa -5'
14452 5' -59.6 NC_003521.1 + 44211 0.69 0.645666
Target:  5'- -gACGCGCAUCCucaaCGGGCugCUCAa-- -3'
miRNA:   3'- uaUGCGUGUAGG----GCCCGugGGGUcua -5'
14452 5' -59.6 NC_003521.1 + 137961 0.69 0.651587
Target:  5'- cUACGCACGgcccagaccuacgCCaCGGGCGCCCUGGc- -3'
miRNA:   3'- uAUGCGUGUa------------GG-GCCCGUGGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 64349 0.69 0.665381
Target:  5'- -aGCuGCAgGcCCUGGGCGCCCUGGAc -3'
miRNA:   3'- uaUG-CGUgUaGGGCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 178587 0.69 0.675206
Target:  5'- --cCGCGCGUCcagCCGGGCGCCCUc--- -3'
miRNA:   3'- uauGCGUGUAG---GGCCCGUGGGGucua -5'
14452 5' -59.6 NC_003521.1 + 177761 0.69 0.675206
Target:  5'- gGUACGCug--CCCGuGGCGCCCaAGAUg -3'
miRNA:   3'- -UAUGCGuguaGGGC-CCGUGGGgUCUA- -5'
14452 5' -59.6 NC_003521.1 + 126385 0.68 0.70445
Target:  5'- gGUGCGCACggCCgucaGGGCGaagCCCGGGUg -3'
miRNA:   3'- -UAUGCGUGuaGGg---CCCGUg--GGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 196126 0.68 0.70445
Target:  5'- ---gGCGCGUCUCGGGUACCUgcguguagCAGAa -3'
miRNA:   3'- uaugCGUGUAGGGCCCGUGGG--------GUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.