miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 5' -59.6 NC_003521.1 + 11504 0.71 0.537978
Target:  5'- uAUGuCGCGCA-CCCGGGCAUUaCCAGAc -3'
miRNA:   3'- -UAU-GCGUGUaGGGCCCGUGG-GGUCUa -5'
14452 5' -59.6 NC_003521.1 + 16031 0.68 0.730338
Target:  5'- -cACGCGCGUCCCgcacgacguggugcGGGCGCUgcugcacaacugCCGGAg -3'
miRNA:   3'- uaUGCGUGUAGGG--------------CCCGUGG------------GGUCUa -5'
14452 5' -59.6 NC_003521.1 + 23231 0.66 0.796977
Target:  5'- --cUGCugGUCCgGGGCGgaCCCGGGg -3'
miRNA:   3'- uauGCGugUAGGgCCCGUg-GGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 27420 0.7 0.596326
Target:  5'- gAUGCGCACGUaggccUCCaGGCAgCCCAGGc -3'
miRNA:   3'- -UAUGCGUGUA-----GGGcCCGUgGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 27517 0.68 0.723675
Target:  5'- -gGCGUGCggCCCGaGGCGCCCaCGGu- -3'
miRNA:   3'- uaUGCGUGuaGGGC-CCGUGGG-GUCua -5'
14452 5' -59.6 NC_003521.1 + 44211 0.69 0.645666
Target:  5'- -gACGCGCAUCCucaaCGGGCugCUCAa-- -3'
miRNA:   3'- uaUGCGUGUAGG----GCCCGugGGGUcua -5'
14452 5' -59.6 NC_003521.1 + 47570 0.7 0.566961
Target:  5'- --cCGCAgccgaccgUAUCCgGGGUACCCCAGGc -3'
miRNA:   3'- uauGCGU--------GUAGGgCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 63056 0.66 0.796977
Target:  5'- ---aGUACAUCuuGGGCGCCaCGGGc -3'
miRNA:   3'- uaugCGUGUAGggCCCGUGGgGUCUa -5'
14452 5' -59.6 NC_003521.1 + 64349 0.69 0.665381
Target:  5'- -aGCuGCAgGcCCUGGGCGCCCUGGAc -3'
miRNA:   3'- uaUG-CGUgUaGGGCCCGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 64854 0.66 0.8056
Target:  5'- -cACG-GCgAUCUCGGGUACCCCGGc- -3'
miRNA:   3'- uaUGCgUG-UAGGGCCCGUGGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 65024 0.7 0.615048
Target:  5'- -cACGCGCAUCCUGGcccgcguGCAgCCCCGGc- -3'
miRNA:   3'- uaUGCGUGUAGGGCC-------CGU-GGGGUCua -5'
14452 5' -59.6 NC_003521.1 + 72796 0.67 0.770308
Target:  5'- -gAUGUGgGUCUCGGGCGCCaCCAaGAa -3'
miRNA:   3'- uaUGCGUgUAGGGCCCGUGG-GGU-CUa -5'
14452 5' -59.6 NC_003521.1 + 77604 0.67 0.751941
Target:  5'- -aACcCACGUCaCCGGGCGCgCCCGuGAc -3'
miRNA:   3'- uaUGcGUGUAG-GGCCCGUG-GGGU-CUa -5'
14452 5' -59.6 NC_003521.1 + 88461 0.75 0.34054
Target:  5'- -gGCGCGCcgCCCcGGCcgGCCCCAGAg -3'
miRNA:   3'- uaUGCGUGuaGGGcCCG--UGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 92094 0.68 0.733181
Target:  5'- gGUGCGCAgGgcggugcCCCGGGUcggaacCCCCGGGUg -3'
miRNA:   3'- -UAUGCGUgUa------GGGCCCGu-----GGGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 92760 1.04 0.004097
Target:  5'- uAUACGCACAUCCCGGGCACCCCAGAUa -3'
miRNA:   3'- -UAUGCGUGUAGGGCCCGUGGGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 92856 0.68 0.733181
Target:  5'- -gGCGCuuGUCUCGuaaccGCACCCCGGAa -3'
miRNA:   3'- uaUGCGugUAGGGCc----CGUGGGGUCUa -5'
14452 5' -59.6 NC_003521.1 + 101017 0.66 0.822398
Target:  5'- -gGgGCGCGUCCuggCGGGCACgCCCGu-- -3'
miRNA:   3'- uaUgCGUGUAGG---GCCCGUG-GGGUcua -5'
14452 5' -59.6 NC_003521.1 + 126385 0.68 0.70445
Target:  5'- gGUGCGCACggCCgucaGGGCGaagCCCGGGUg -3'
miRNA:   3'- -UAUGCGUGuaGGg---CCCGUg--GGGUCUA- -5'
14452 5' -59.6 NC_003521.1 + 128793 0.66 0.814076
Target:  5'- aGUACGCGg--UCgGGGCACCgCAGAa -3'
miRNA:   3'- -UAUGCGUguaGGgCCCGUGGgGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.