miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 187771 0.67 0.998909
Target:  5'- cCCGAUCaaagaaGAACGCCGccGUCaCAGCGu -3'
miRNA:   3'- aGGCUAG------CUUGUGGUuuUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 21130 0.67 0.998909
Target:  5'- gCCGA-CGAccCGCCAgAGAUCCCAGa- -3'
miRNA:   3'- aGGCUaGCUu-GUGGU-UUUAGGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 70921 0.67 0.998909
Target:  5'- gCCG-UC-AGCGCCAGcagGGUCCaCAGCAg -3'
miRNA:   3'- aGGCuAGcUUGUGGUU---UUAGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 142828 0.67 0.998909
Target:  5'- uUCgGcAUCGGcaccaACACCAGcGUCCuCGGCAg -3'
miRNA:   3'- -AGgC-UAGCU-----UGUGGUUuUAGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 207367 0.67 0.998909
Target:  5'- gCCGGcCG-ACACCGAGAacagcgcgagcCCCAGCAg -3'
miRNA:   3'- aGGCUaGCuUGUGGUUUUa----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 228853 0.67 0.998681
Target:  5'- cUCgCGGUCcaAACACCAcAugguuucguaacGUCCCAGCAg -3'
miRNA:   3'- -AG-GCUAGc-UUGUGGUuU------------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 179492 0.67 0.998681
Target:  5'- cUCCGG-C-AGCGCCGGGgaacacguGUCCCAGUAg -3'
miRNA:   3'- -AGGCUaGcUUGUGGUUU--------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 160506 0.67 0.998414
Target:  5'- aUCCaGUCGcgcagcuccAGCACCAccGUCaCCAGCAc -3'
miRNA:   3'- -AGGcUAGC---------UUGUGGUuuUAG-GGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 64904 0.67 0.998414
Target:  5'- cUCCGGcuccUCGG--GCCAGGucCCCAGCAg -3'
miRNA:   3'- -AGGCU----AGCUugUGGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 162620 0.67 0.998414
Target:  5'- cUCCGA-CGAGCGCCGcg--CCCGcuccGCAc -3'
miRNA:   3'- -AGGCUaGCUUGUGGUuuuaGGGU----CGU- -5'
14453 3' -49.7 NC_003521.1 + 175855 0.67 0.998414
Target:  5'- gUCUGGccUCGAcaauuaGCAgCCGAGAggugCCCAGCGa -3'
miRNA:   3'- -AGGCU--AGCU------UGU-GGUUUUa---GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 186653 0.67 0.998355
Target:  5'- cUCCGGUUG-ACACaggggccCCCAGCAc -3'
miRNA:   3'- -AGGCUAGCuUGUGguuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 157607 0.68 0.998102
Target:  5'- gCCGA--GGGCACCGuguacCCCAGCGa -3'
miRNA:   3'- aGGCUagCUUGUGGUuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 36549 0.68 0.998102
Target:  5'- gCCGGucaugUCGAGCGCC---GUCuCCAGCc -3'
miRNA:   3'- aGGCU-----AGCUUGUGGuuuUAG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 47262 0.68 0.998102
Target:  5'- -gCGAggUGGugGCCAAaccgcccgagGAUCCCGGCGa -3'
miRNA:   3'- agGCUa-GCUugUGGUU----------UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 224537 0.68 0.99774
Target:  5'- gCCGGUa-GGCACCccGGcgCCCAGCAg -3'
miRNA:   3'- aGGCUAgcUUGUGGu-UUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 111696 0.68 0.99774
Target:  5'- -aCGcaGUCGGACGCCGAcguccAGUCCguGCGc -3'
miRNA:   3'- agGC--UAGCUUGUGGUU-----UUAGGguCGU- -5'
14453 3' -49.7 NC_003521.1 + 171566 0.68 0.997323
Target:  5'- aCCGcuugccacGUCGGcCACCAucAUCaCCAGCAc -3'
miRNA:   3'- aGGC--------UAGCUuGUGGUuuUAG-GGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 172216 0.68 0.997323
Target:  5'- gCCGAgucgaaGAAgGCCGAGGUCCC-GUAg -3'
miRNA:   3'- aGGCUag----CUUgUGGUUUUAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 78509 0.68 0.997043
Target:  5'- gCCGAcCGGACACgcgacgcggauuccgCGGAcUCCCGGCGu -3'
miRNA:   3'- aGGCUaGCUUGUG---------------GUUUuAGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.