miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 116613 0.66 0.999451
Target:  5'- cCCGGUCGcGgGCCAGAAagggcccgcucaccCCCAGCc -3'
miRNA:   3'- aGGCUAGCuUgUGGUUUUa-------------GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 92668 0.66 0.999403
Target:  5'- cCCGGUCGAGCAgCCucggcGAGGUgCCGGg- -3'
miRNA:   3'- aGGCUAGCUUGU-GG-----UUUUAgGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 223825 0.66 0.999403
Target:  5'- gCCGccaccgCGGGCGCCugcuGUCCCuGCGg -3'
miRNA:   3'- aGGCua----GCUUGUGGuuu-UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 21387 0.66 0.999403
Target:  5'- aCCGAgcugugCGAGCGCUggGAUacggCCCucuGGCAg -3'
miRNA:   3'- aGGCUa-----GCUUGUGGuuUUA----GGG---UCGU- -5'
14453 3' -49.7 NC_003521.1 + 174374 0.66 0.999403
Target:  5'- --aGAuacUCGGACACCAGcgcguccugcAGUUCCAGCu -3'
miRNA:   3'- aggCU---AGCUUGUGGUU----------UUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 12804 0.66 0.999403
Target:  5'- cUCCGAucUCGAguGCGCCAAgcAGUaCUGGCAg -3'
miRNA:   3'- -AGGCU--AGCU--UGUGGUU--UUAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 185016 0.66 0.999403
Target:  5'- aCUGGuUCGAgcGCACCAucuAUgCCGGCGg -3'
miRNA:   3'- aGGCU-AGCU--UGUGGUuu-UAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 121707 0.66 0.999403
Target:  5'- aUCCGAguUCcGACcCCAGucgCCCGGCGa -3'
miRNA:   3'- -AGGCU--AGcUUGuGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 100622 0.66 0.999403
Target:  5'- -gCGAcUCGGcCGCCAAGAUCCaggAGCGc -3'
miRNA:   3'- agGCU-AGCUuGUGGUUUUAGGg--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 123240 0.67 0.999266
Target:  5'- -gUGGUCGuAGCGCCGcg--CCCAGUAg -3'
miRNA:   3'- agGCUAGC-UUGUGGUuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 42861 0.67 0.999266
Target:  5'- gCCGGcgUCGGACACCGAcugagguGUCUC-GCAa -3'
miRNA:   3'- aGGCU--AGCUUGUGGUUu------UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 224984 0.67 0.999266
Target:  5'- -gCGGUCGcccaccAGCACCAcgcacuugCCCAGCAc -3'
miRNA:   3'- agGCUAGC------UUGUGGUuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 219414 0.67 0.999266
Target:  5'- gCCGAguagcugccaGAGgGCCGu-AUCCCAGCGc -3'
miRNA:   3'- aGGCUag--------CUUgUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 220662 0.67 0.999103
Target:  5'- aCCG-UCGu-CGCCGucGUCUCGGCAc -3'
miRNA:   3'- aGGCuAGCuuGUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 230760 0.67 0.999103
Target:  5'- cCCGGUgGAAgACaCAGAAUUCCuGCu -3'
miRNA:   3'- aGGCUAgCUUgUG-GUUUUAGGGuCGu -5'
14453 3' -49.7 NC_003521.1 + 35638 0.67 0.999103
Target:  5'- cUCCGGaccCucAUACCGAGAUCaCCAGCu -3'
miRNA:   3'- -AGGCUa--GcuUGUGGUUUUAG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 203383 0.67 0.999103
Target:  5'- aCCGccgCGGuCGCCucAGGUCCCGGCc -3'
miRNA:   3'- aGGCua-GCUuGUGGu-UUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 135405 0.67 0.999103
Target:  5'- gCCGAggCGGGCgggaACCAAucaCCCGGCGc -3'
miRNA:   3'- aGGCUa-GCUUG----UGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 132572 0.67 0.999029
Target:  5'- cUCCGGUCG-ACACCAGAAgaugauggaagCGGCGg -3'
miRNA:   3'- -AGGCUAGCuUGUGGUUUUagg--------GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214044 0.67 0.998991
Target:  5'- aCCGGUggccggacagguaacUGAACA-UGAGGUCCCAGCGc -3'
miRNA:   3'- aGGCUA---------------GCUUGUgGUUUUAGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.