miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 33485 0.66 0.999517
Target:  5'- cCCaGAucUCGGGCGCCAcgcgAGcgUCCGGCAc -3'
miRNA:   3'- aGG-CU--AGCUUGUGGU----UUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 226426 0.66 0.999517
Target:  5'- cUCCGAgcgCGAcACGCCGuAGcgCgCCAGCu -3'
miRNA:   3'- -AGGCUa--GCU-UGUGGU-UUuaG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 45437 0.66 0.999603
Target:  5'- cUCCGAUuacgguaCGGGCGCCuc-GUCCUcgGGCGu -3'
miRNA:   3'- -AGGCUA-------GCUUGUGGuuuUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 223825 0.66 0.999403
Target:  5'- gCCGccaccgCGGGCGCCugcuGUCCCuGCGg -3'
miRNA:   3'- aGGCua----GCUUGUGGuuu-UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 185016 0.66 0.999403
Target:  5'- aCUGGuUCGAgcGCACCAucuAUgCCGGCGg -3'
miRNA:   3'- aGGCU-AGCU--UGUGGUuu-UAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214806 0.66 0.99969
Target:  5'- aCCGccGUCGGGCGCCGGg--CgCGGCGa -3'
miRNA:   3'- aGGC--UAGCUUGUGGUUuuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 123401 0.66 0.999612
Target:  5'- gCCGcgCGGAC-CCGAGAUgccgcccuccaCCCGGUg -3'
miRNA:   3'- aGGCuaGCUUGuGGUUUUA-----------GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 117760 0.66 0.99969
Target:  5'- cUCC--UCGc-CGCCGccGUCCCAGCAg -3'
miRNA:   3'- -AGGcuAGCuuGUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 212710 0.66 0.99969
Target:  5'- uUUCGAUC---CGCCAGGGUaCCAGCAu -3'
miRNA:   3'- -AGGCUAGcuuGUGGUUUUAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 132572 0.67 0.999029
Target:  5'- cUCCGGUCG-ACACCAGAAgaugauggaagCGGCGg -3'
miRNA:   3'- -AGGCUAGCuUGUGGUUUUagg--------GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 162620 0.67 0.998414
Target:  5'- cUCCGA-CGAGCGCCGcg--CCCGcuccGCAc -3'
miRNA:   3'- -AGGCUaGCUUGUGGUuuuaGGGU----CGU- -5'
14453 3' -49.7 NC_003521.1 + 224984 0.67 0.999266
Target:  5'- -gCGGUCGcccaccAGCACCAcgcacuugCCCAGCAc -3'
miRNA:   3'- agGCUAGC------UUGUGGUuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 220662 0.67 0.999103
Target:  5'- aCCG-UCGu-CGCCGucGUCUCGGCAc -3'
miRNA:   3'- aGGCuAGCuuGUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 219414 0.67 0.999266
Target:  5'- gCCGAguagcugccaGAGgGCCGu-AUCCCAGCGc -3'
miRNA:   3'- aGGCUag--------CUUgUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 175855 0.67 0.998414
Target:  5'- gUCUGGccUCGAcaauuaGCAgCCGAGAggugCCCAGCGa -3'
miRNA:   3'- -AGGCU--AGCU------UGU-GGUUUUa---GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 186653 0.67 0.998355
Target:  5'- cUCCGGUUG-ACACaggggccCCCAGCAc -3'
miRNA:   3'- -AGGCUAGCuUGUGguuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 160506 0.67 0.998414
Target:  5'- aUCCaGUCGcgcagcuccAGCACCAccGUCaCCAGCAc -3'
miRNA:   3'- -AGGcUAGC---------UUGUGGUuuUAG-GGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 123240 0.67 0.999266
Target:  5'- -gUGGUCGuAGCGCCGcg--CCCAGUAg -3'
miRNA:   3'- agGCUAGC-UUGUGGUuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 42861 0.67 0.999266
Target:  5'- gCCGGcgUCGGACACCGAcugagguGUCUC-GCAa -3'
miRNA:   3'- aGGCU--AGCUUGUGGUUu------UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 64904 0.67 0.998414
Target:  5'- cUCCGGcuccUCGG--GCCAGGucCCCAGCAg -3'
miRNA:   3'- -AGGCU----AGCUugUGGUUUuaGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.