Results 21 - 40 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 34996 | 0.68 | 0.996632 |
Target: 5'- cUCCGGggccagCGAGCGCUugcgucgugCCCGGCGg -3' miRNA: 3'- -AGGCUa-----GCUUGUGGuuuua----GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 85628 | 0.68 | 0.996294 |
Target: 5'- gCCGAgaggUCGuGCACCuccccCCCGGCAg -3' miRNA: 3'- aGGCU----AGCuUGUGGuuuuaGGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 168095 | 0.71 | 0.984238 |
Target: 5'- aCCGGUCGGAUGCCcuccaacacgcgcccGGGGUCCUGGUg -3' miRNA: 3'- aGGCUAGCUUGUGG---------------UUUUAGGGUCGu -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 81039 | 0.71 | 0.979314 |
Target: 5'- gUCUGGUUGAuguugacgcacuGCGCCAAc--CCCAGCAc -3' miRNA: 3'- -AGGCUAGCU------------UGUGGUUuuaGGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 19256 | 0.71 | 0.974406 |
Target: 5'- aCCug-UGGACGCCc-GAUCCCAGCAa -3' miRNA: 3'- aGGcuaGCUUGUGGuuUUAGGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 33595 | 0.72 | 0.968702 |
Target: 5'- uUCUGGUCGcGCACCAccccgAAAUaguugcugucgCCCAGCAa -3' miRNA: 3'- -AGGCUAGCuUGUGGU-----UUUA-----------GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 226580 | 0.72 | 0.965534 |
Target: 5'- gCgGAUCGGGCAgCAGGAUcacggcguagCCCAGCGg -3' miRNA: 3'- aGgCUAGCUUGUgGUUUUA----------GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 123328 | 0.72 | 0.962146 |
Target: 5'- gCCGucCGAACACCGAcggcCCCAGCGc -3' miRNA: 3'- aGGCuaGCUUGUGGUUuua-GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 203449 | 0.72 | 0.957785 |
Target: 5'- gCCGccUCGAACACCGcagucgccgaccAGUCCCGGCGg -3' miRNA: 3'- aGGCu-AGCUUGUGGUu-----------UUAGGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 59936 | 0.75 | 0.882791 |
Target: 5'- cUCCGAcgUGGACGCCGAucaacagCCCGGCGc -3' miRNA: 3'- -AGGCUa-GCUUGUGGUUuua----GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 193533 | 0.7 | 0.985317 |
Target: 5'- aCgGAUCGGACggaccuucGCCGGGAUCCUcgGGCGg -3' miRNA: 3'- aGgCUAGCUUG--------UGGUUUUAGGG--UCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 117856 | 0.7 | 0.986988 |
Target: 5'- gUCCGA-CGAGgACCuGAGUuucCCCGGCGa -3' miRNA: 3'- -AGGCUaGCUUgUGGuUUUA---GGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 45693 | 0.69 | 0.995669 |
Target: 5'- aCCGAgCGGACACCGua--CCgCGGCGa -3' miRNA: 3'- aGGCUaGCUUGUGGUuuuaGG-GUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 45228 | 0.69 | 0.994961 |
Target: 5'- -aUGAUCGAagGCGCCg----CCCGGCAg -3' miRNA: 3'- agGCUAGCU--UGUGGuuuuaGGGUCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 227828 | 0.69 | 0.994961 |
Target: 5'- gUCCGAguaGuACACaCAGAGUCCCuGGCu -3' miRNA: 3'- -AGGCUag-CuUGUG-GUUUUAGGG-UCGu -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 162342 | 0.69 | 0.994162 |
Target: 5'- gUCCGAgguaagucacgUCGcGCGCCGGGccgcguUCCCAGCc -3' miRNA: 3'- -AGGCU-----------AGCuUGUGGUUUu-----AGGGUCGu -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 103939 | 0.69 | 0.993903 |
Target: 5'- gUCGAccgCGAACACCGgcgccacccgccgcGAGUCCguGCAu -3' miRNA: 3'- aGGCUa--GCUUGUGGU--------------UUUAGGguCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 78871 | 0.69 | 0.993263 |
Target: 5'- gCCGGUCGAugACCAGGcgCgUCAGgGg -3' miRNA: 3'- aGGCUAGCUugUGGUUUuaG-GGUCgU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 79068 | 0.69 | 0.993167 |
Target: 5'- gUCCGGggcUCGGGCACCAGc-UCCCccacgcuGGCGa -3' miRNA: 3'- -AGGCU---AGCUUGUGGUUuuAGGG-------UCGU- -5' |
|||||||
14453 | 3' | -49.7 | NC_003521.1 | + | 214601 | 0.7 | 0.986988 |
Target: 5'- aCCGGUacgaGAGCugCGGGuagCCCAGCc -3' miRNA: 3'- aGGCUAg---CUUGugGUUUua-GGGUCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home