miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 34996 0.68 0.996632
Target:  5'- cUCCGGggccagCGAGCGCUugcgucgugCCCGGCGg -3'
miRNA:   3'- -AGGCUa-----GCUUGUGGuuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 79068 0.69 0.993167
Target:  5'- gUCCGGggcUCGGGCACCAGc-UCCCccacgcuGGCGa -3'
miRNA:   3'- -AGGCU---AGCUUGUGGUUuuAGGG-------UCGU- -5'
14453 3' -49.7 NC_003521.1 + 78871 0.69 0.993263
Target:  5'- gCCGGUCGAugACCAGGcgCgUCAGgGg -3'
miRNA:   3'- aGGCUAGCUugUGGUUUuaG-GGUCgU- -5'
14453 3' -49.7 NC_003521.1 + 103939 0.69 0.993903
Target:  5'- gUCGAccgCGAACACCGgcgccacccgccgcGAGUCCguGCAu -3'
miRNA:   3'- aGGCUa--GCUUGUGGU--------------UUUAGGguCGU- -5'
14453 3' -49.7 NC_003521.1 + 162342 0.69 0.994162
Target:  5'- gUCCGAgguaagucacgUCGcGCGCCGGGccgcguUCCCAGCc -3'
miRNA:   3'- -AGGCU-----------AGCuUGUGGUUUu-----AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 227828 0.69 0.994961
Target:  5'- gUCCGAguaGuACACaCAGAGUCCCuGGCu -3'
miRNA:   3'- -AGGCUag-CuUGUG-GUUUUAGGG-UCGu -5'
14453 3' -49.7 NC_003521.1 + 45228 0.69 0.994961
Target:  5'- -aUGAUCGAagGCGCCg----CCCGGCAg -3'
miRNA:   3'- agGCUAGCU--UGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 45693 0.69 0.995669
Target:  5'- aCCGAgCGGACACCGua--CCgCGGCGa -3'
miRNA:   3'- aGGCUaGCUUGUGGUuuuaGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 85628 0.68 0.996294
Target:  5'- gCCGAgaggUCGuGCACCuccccCCCGGCAg -3'
miRNA:   3'- aGGCU----AGCuUGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214601 0.7 0.986988
Target:  5'- aCCGGUacgaGAGCugCGGGuagCCCAGCc -3'
miRNA:   3'- aGGCUAg---CUUGugGUUUua-GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 117856 0.7 0.986988
Target:  5'- gUCCGA-CGAGgACCuGAGUuucCCCGGCGa -3'
miRNA:   3'- -AGGCUaGCUUgUGGuUUUA---GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 193533 0.7 0.985317
Target:  5'- aCgGAUCGGACggaccuucGCCGGGAUCCUcgGGCGg -3'
miRNA:   3'- aGgCUAGCUUG--------UGGUUUUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 59936 0.75 0.882791
Target:  5'- cUCCGAcgUGGACGCCGAucaacagCCCGGCGc -3'
miRNA:   3'- -AGGCUa-GCUUGUGGUUuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 203449 0.72 0.957785
Target:  5'- gCCGccUCGAACACCGcagucgccgaccAGUCCCGGCGg -3'
miRNA:   3'- aGGCu-AGCUUGUGGUu-----------UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 123328 0.72 0.962146
Target:  5'- gCCGucCGAACACCGAcggcCCCAGCGc -3'
miRNA:   3'- aGGCuaGCUUGUGGUUuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 226580 0.72 0.965534
Target:  5'- gCgGAUCGGGCAgCAGGAUcacggcguagCCCAGCGg -3'
miRNA:   3'- aGgCUAGCUUGUgGUUUUA----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 33595 0.72 0.968702
Target:  5'- uUCUGGUCGcGCACCAccccgAAAUaguugcugucgCCCAGCAa -3'
miRNA:   3'- -AGGCUAGCuUGUGGU-----UUUA-----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 19256 0.71 0.974406
Target:  5'- aCCug-UGGACGCCc-GAUCCCAGCAa -3'
miRNA:   3'- aGGcuaGCUUGUGGuuUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 81039 0.71 0.979314
Target:  5'- gUCUGGUUGAuguugacgcacuGCGCCAAc--CCCAGCAc -3'
miRNA:   3'- -AGGCUAGCU------------UGUGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 168095 0.71 0.984238
Target:  5'- aCCGGUCGGAUGCCcuccaacacgcgcccGGGGUCCUGGUg -3'
miRNA:   3'- aGGCUAGCUUGUGG---------------UUUUAGGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.