miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 7739 0.68 0.996843
Target:  5'- gCgGcgCGAGCGgCGGAggcggcggcaGUCCCAGCAg -3'
miRNA:   3'- aGgCuaGCUUGUgGUUU----------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 12804 0.66 0.999403
Target:  5'- cUCCGAucUCGAguGCGCCAAgcAGUaCUGGCAg -3'
miRNA:   3'- -AGGCU--AGCU--UGUGGUU--UUAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 19256 0.71 0.974406
Target:  5'- aCCug-UGGACGCCc-GAUCCCAGCAa -3'
miRNA:   3'- aGGcuaGCUUGUGGuuUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 21130 0.67 0.998909
Target:  5'- gCCGA-CGAccCGCCAgAGAUCCCAGa- -3'
miRNA:   3'- aGGCUaGCUu-GUGGU-UUUAGGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 21387 0.66 0.999403
Target:  5'- aCCGAgcugugCGAGCGCUggGAUacggCCCucuGGCAg -3'
miRNA:   3'- aGGCUa-----GCUUGUGGuuUUA----GGG---UCGU- -5'
14453 3' -49.7 NC_003521.1 + 31733 0.66 0.999612
Target:  5'- aUCUGAUCcuGAACAUCAu--UCCCuGUAu -3'
miRNA:   3'- -AGGCUAG--CUUGUGGUuuuAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 33485 0.66 0.999517
Target:  5'- cCCaGAucUCGGGCGCCAcgcgAGcgUCCGGCAc -3'
miRNA:   3'- aGG-CU--AGCUUGUGGU----UUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 33595 0.72 0.968702
Target:  5'- uUCUGGUCGcGCACCAccccgAAAUaguugcugucgCCCAGCAa -3'
miRNA:   3'- -AGGCUAGCuUGUGGU-----UUUA-----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 34996 0.68 0.996632
Target:  5'- cUCCGGggccagCGAGCGCUugcgucgugCCCGGCGg -3'
miRNA:   3'- -AGGCUa-----GCUUGUGGuuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 35638 0.67 0.999103
Target:  5'- cUCCGGaccCucAUACCGAGAUCaCCAGCu -3'
miRNA:   3'- -AGGCUa--GcuUGUGGUUUUAG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 36549 0.68 0.998102
Target:  5'- gCCGGucaugUCGAGCGCC---GUCuCCAGCc -3'
miRNA:   3'- aGGCU-----AGCUUGUGGuuuUAG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 38236 0.66 0.999612
Target:  5'- gCCGAggaGAgcauugACGCCGGuGAUCUCAGCGg -3'
miRNA:   3'- aGGCUag-CU------UGUGGUU-UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 42861 0.67 0.999266
Target:  5'- gCCGGcgUCGGACACCGAcugagguGUCUC-GCAa -3'
miRNA:   3'- aGGCU--AGCUUGUGGUUu------UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 45228 0.69 0.994961
Target:  5'- -aUGAUCGAagGCGCCg----CCCGGCAg -3'
miRNA:   3'- agGCUAGCU--UGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 45437 0.66 0.999603
Target:  5'- cUCCGAUuacgguaCGGGCGCCuc-GUCCUcgGGCGu -3'
miRNA:   3'- -AGGCUA-------GCUUGUGGuuuUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 45693 0.69 0.995669
Target:  5'- aCCGAgCGGACACCGua--CCgCGGCGa -3'
miRNA:   3'- aGGCUaGCUUGUGGUuuuaGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 47262 0.68 0.998102
Target:  5'- -gCGAggUGGugGCCAAaccgcccgagGAUCCCGGCGa -3'
miRNA:   3'- agGCUa-GCUugUGGUU----------UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 47539 0.71 0.976956
Target:  5'- gCCGAcUCcGACGCCc--GUCCCGGCAc -3'
miRNA:   3'- aGGCU-AGcUUGUGGuuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 50326 0.68 0.996843
Target:  5'- -gCGaAUCGGACGCCAAGuaccguuUCCCGGg- -3'
miRNA:   3'- agGC-UAGCUUGUGGUUUu------AGGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 56669 0.66 0.99969
Target:  5'- cCCGcUCGcGCACC-AGGUCgCAGUAg -3'
miRNA:   3'- aGGCuAGCuUGUGGuUUUAGgGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.