miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 233030 0.66 0.999612
Target:  5'- cCCGAc---ACGCCGuAAUCUCAGCAa -3'
miRNA:   3'- aGGCUagcuUGUGGUuUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 232523 0.68 0.996843
Target:  5'- gCUGGacuUCGGGCGCCAGuuUCUgGGCGa -3'
miRNA:   3'- aGGCU---AGCUUGUGGUUuuAGGgUCGU- -5'
14453 3' -49.7 NC_003521.1 + 230760 0.67 0.999103
Target:  5'- cCCGGUgGAAgACaCAGAAUUCCuGCu -3'
miRNA:   3'- aGGCUAgCUUgUG-GUUUUAGGGuCGu -5'
14453 3' -49.7 NC_003521.1 + 228853 0.67 0.998681
Target:  5'- cUCgCGGUCcaAACACCAcAugguuucguaacGUCCCAGCAg -3'
miRNA:   3'- -AG-GCUAGc-UUGUGGUuU------------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 227828 0.69 0.994961
Target:  5'- gUCCGAguaGuACACaCAGAGUCCCuGGCu -3'
miRNA:   3'- -AGGCUag-CuUGUG-GUUUUAGGG-UCGu -5'
14453 3' -49.7 NC_003521.1 + 226580 0.72 0.965534
Target:  5'- gCgGAUCGGGCAgCAGGAUcacggcguagCCCAGCGg -3'
miRNA:   3'- aGgCUAGCUUGUgGUUUUA----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 226426 0.66 0.999517
Target:  5'- cUCCGAgcgCGAcACGCCGuAGcgCgCCAGCu -3'
miRNA:   3'- -AGGCUa--GCU-UGUGGU-UUuaG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 224984 0.67 0.999266
Target:  5'- -gCGGUCGcccaccAGCACCAcgcacuugCCCAGCAc -3'
miRNA:   3'- agGCUAGC------UUGUGGUuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 224537 0.68 0.99774
Target:  5'- gCCGGUa-GGCACCccGGcgCCCAGCAg -3'
miRNA:   3'- aGGCUAgcUUGUGGu-UUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 223825 0.66 0.999403
Target:  5'- gCCGccaccgCGGGCGCCugcuGUCCCuGCGg -3'
miRNA:   3'- aGGCua----GCUUGUGGuuu-UAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 220662 0.67 0.999103
Target:  5'- aCCG-UCGu-CGCCGucGUCUCGGCAc -3'
miRNA:   3'- aGGCuAGCuuGUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 219414 0.67 0.999266
Target:  5'- gCCGAguagcugccaGAGgGCCGu-AUCCCAGCGc -3'
miRNA:   3'- aGGCUag--------CUUgUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 216333 0.68 0.996843
Target:  5'- gCCGcUCGuAGCGCCAGuagaUCCAGCAc -3'
miRNA:   3'- aGGCuAGC-UUGUGGUUuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214806 0.66 0.99969
Target:  5'- aCCGccGUCGGGCGCCGGg--CgCGGCGa -3'
miRNA:   3'- aGGC--UAGCUUGUGGUUuuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214601 0.7 0.986988
Target:  5'- aCCGGUacgaGAGCugCGGGuagCCCAGCc -3'
miRNA:   3'- aGGCUAg---CUUGugGUUUua-GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 214044 0.67 0.998991
Target:  5'- aCCGGUggccggacagguaacUGAACA-UGAGGUCCCAGCGc -3'
miRNA:   3'- aGGCUA---------------GCUUGUgGUUUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 212710 0.66 0.99969
Target:  5'- uUUCGAUC---CGCCAGGGUaCCAGCAu -3'
miRNA:   3'- -AGGCUAGcuuGUGGUUUUAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 209081 0.75 0.905557
Target:  5'- gCCGGUCGAgGCGgCGGAggcgguggccgcggcGUCCCAGCAc -3'
miRNA:   3'- aGGCUAGCU-UGUgGUUU---------------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 207367 0.67 0.998909
Target:  5'- gCCGGcCG-ACACCGAGAacagcgcgagcCCCAGCAg -3'
miRNA:   3'- aGGCUaGCuUGUGGUUUUa----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 203449 0.72 0.957785
Target:  5'- gCCGccUCGAACACCGcagucgccgaccAGUCCCGGCGg -3'
miRNA:   3'- aGGCu-AGCUUGUGGUu-----------UUAGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.