miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 92941 1.1 0.016552
Target:  5'- uUCCGAUCGAACACCAAAAUCCCAGCAc -3'
miRNA:   3'- -AGGCUAGCUUGUGGUUUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 178719 0.78 0.754323
Target:  5'- cCCGcgCGGGCGCCGAAGcguUCCCGGUu -3'
miRNA:   3'- aGGCuaGCUUGUGGUUUU---AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 59936 0.75 0.882791
Target:  5'- cUCCGAcgUGGACGCCGAucaacagCCCGGCGc -3'
miRNA:   3'- -AGGCUa-GCUUGUGGUUuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 209081 0.75 0.905557
Target:  5'- gCCGGUCGAgGCGgCGGAggcgguggccgcggcGUCCCAGCAc -3'
miRNA:   3'- aGGCUAGCU-UGUgGUUU---------------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 203449 0.72 0.957785
Target:  5'- gCCGccUCGAACACCGcagucgccgaccAGUCCCGGCGg -3'
miRNA:   3'- aGGCu-AGCUUGUGGUu-----------UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 123328 0.72 0.962146
Target:  5'- gCCGucCGAACACCGAcggcCCCAGCGc -3'
miRNA:   3'- aGGCuaGCUUGUGGUUuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 226580 0.72 0.965534
Target:  5'- gCgGAUCGGGCAgCAGGAUcacggcguagCCCAGCGg -3'
miRNA:   3'- aGgCUAGCUUGUgGUUUUA----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 33595 0.72 0.968702
Target:  5'- uUCUGGUCGcGCACCAccccgAAAUaguugcugucgCCCAGCAa -3'
miRNA:   3'- -AGGCUAGCuUGUGGU-----UUUA-----------GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 112087 0.72 0.968702
Target:  5'- -aCGGgcUCGGGCGCCAAGAUCagCGGCGu -3'
miRNA:   3'- agGCU--AGCUUGUGGUUUUAGg-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 182368 0.72 0.971657
Target:  5'- cCUGGUCGAcgugguGCGCgGAAAguucgCCCGGCAg -3'
miRNA:   3'- aGGCUAGCU------UGUGgUUUUa----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 19256 0.71 0.974406
Target:  5'- aCCug-UGGACGCCc-GAUCCCAGCAa -3'
miRNA:   3'- aGGcuaGCUUGUGGuuUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 47539 0.71 0.976956
Target:  5'- gCCGAcUCcGACGCCc--GUCCCGGCAc -3'
miRNA:   3'- aGGCU-AGcUUGUGGuuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 81039 0.71 0.979314
Target:  5'- gUCUGGUUGAuguugacgcacuGCGCCAAc--CCCAGCAc -3'
miRNA:   3'- -AGGCUAGCU------------UGUGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 196571 0.71 0.981488
Target:  5'- cUCCGG-CGuGACGCCGGAcUCCCGcGCAc -3'
miRNA:   3'- -AGGCUaGC-UUGUGGUUUuAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 168095 0.71 0.984238
Target:  5'- aCCGGUCGGAUGCCcuccaacacgcgcccGGGGUCCUGGUg -3'
miRNA:   3'- aGGCUAGCUUGUGG---------------UUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 201780 0.7 0.985317
Target:  5'- aUUCGucUGGGCAcCCAGAcgCCCAGCAa -3'
miRNA:   3'- -AGGCuaGCUUGU-GGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 193533 0.7 0.985317
Target:  5'- aCgGAUCGGACggaccuucGCCGGGAUCCUcgGGCGg -3'
miRNA:   3'- aGgCUAGCUUG--------UGGUUUUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 179975 0.7 0.986988
Target:  5'- gCUGcgCGAACACCugcggGAAGUCCUGGUg -3'
miRNA:   3'- aGGCuaGCUUGUGG-----UUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 214601 0.7 0.986988
Target:  5'- aCCGGUacgaGAGCugCGGGuagCCCAGCc -3'
miRNA:   3'- aGGCUAg---CUUGugGUUUua-GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 117856 0.7 0.986988
Target:  5'- gUCCGA-CGAGgACCuGAGUuucCCCGGCGa -3'
miRNA:   3'- -AGGCUaGCUUgUGGuUUUA---GGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.