miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 104244 0.7 0.98851
Target:  5'- -gUGAUCGAGCACCAGG--UgCAGCGg -3'
miRNA:   3'- agGCUAGCUUGUGGUUUuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 179855 0.69 0.992257
Target:  5'- cCUGGUCGGGCAUCAGGA-UgCGGCAc -3'
miRNA:   3'- aGGCUAGCUUGUGGUUUUaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 79068 0.69 0.993167
Target:  5'- gUCCGGggcUCGGGCACCAGc-UCCCccacgcuGGCGa -3'
miRNA:   3'- -AGGCU---AGCUUGUGGUUuuAGGG-------UCGU- -5'
14453 3' -49.7 NC_003521.1 + 78871 0.69 0.993263
Target:  5'- gCCGGUCGAugACCAGGcgCgUCAGgGg -3'
miRNA:   3'- aGGCUAGCUugUGGUUUuaG-GGUCgU- -5'
14453 3' -49.7 NC_003521.1 + 140582 0.69 0.993263
Target:  5'- cUCGucGUCGGGCACCucg--CCCAGCu -3'
miRNA:   3'- aGGC--UAGCUUGUGGuuuuaGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 103939 0.69 0.993903
Target:  5'- gUCGAccgCGAACACCGgcgccacccgccgcGAGUCCguGCAu -3'
miRNA:   3'- aGGCUa--GCUUGUGGU--------------UUUAGGguCGU- -5'
14453 3' -49.7 NC_003521.1 + 172306 0.69 0.994162
Target:  5'- gUCCGGugUCGGugGCGCCAGgccGGUCgCGGCGg -3'
miRNA:   3'- -AGGCU--AGCU--UGUGGUU---UUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 162342 0.69 0.994162
Target:  5'- gUCCGAgguaagucacgUCGcGCGCCGGGccgcguUCCCAGCc -3'
miRNA:   3'- -AGGCU-----------AGCuUGUGGUUUu-----AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 57324 0.69 0.994961
Target:  5'- -aCGcUCGGACACCu--GUCCgAGCGc -3'
miRNA:   3'- agGCuAGCUUGUGGuuuUAGGgUCGU- -5'
14453 3' -49.7 NC_003521.1 + 227828 0.69 0.994961
Target:  5'- gUCCGAguaGuACACaCAGAGUCCCuGGCu -3'
miRNA:   3'- -AGGCUag-CuUGUG-GUUUUAGGG-UCGu -5'
14453 3' -49.7 NC_003521.1 + 45228 0.69 0.994961
Target:  5'- -aUGAUCGAagGCGCCg----CCCGGCAg -3'
miRNA:   3'- agGCUAGCU--UGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 107643 0.69 0.995669
Target:  5'- cCCGAUCGccgaggcCGCCAcugcugguGUCCCGGCu -3'
miRNA:   3'- aGGCUAGCuu-----GUGGUuu------UAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 45693 0.69 0.995669
Target:  5'- aCCGAgCGGACACCGua--CCgCGGCGa -3'
miRNA:   3'- aGGCUaGCUUGUGGUuuuaGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 85628 0.68 0.996294
Target:  5'- gCCGAgaggUCGuGCACCuccccCCCGGCAg -3'
miRNA:   3'- aGGCU----AGCuUGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 34996 0.68 0.996632
Target:  5'- cUCCGGggccagCGAGCGCUugcgucgugCCCGGCGg -3'
miRNA:   3'- -AGGCUa-----GCUUGUGGuuuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 64765 0.68 0.996843
Target:  5'- gCCGG-CGcGGCACCGGgcGAUCCCAaGCGc -3'
miRNA:   3'- aGGCUaGC-UUGUGGUU--UUAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 91386 0.68 0.996843
Target:  5'- cCCGGgccCGGACccccgACCcAAAUCCCGGCc -3'
miRNA:   3'- aGGCUa--GCUUG-----UGGuUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 181087 0.68 0.996843
Target:  5'- gUCCGGccCGAAgGCCAGA--UCCGGCGu -3'
miRNA:   3'- -AGGCUa-GCUUgUGGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 216333 0.68 0.996843
Target:  5'- gCCGcUCGuAGCGCCAGuagaUCCAGCAc -3'
miRNA:   3'- aGGCuAGC-UUGUGGUUuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 232523 0.68 0.996843
Target:  5'- gCUGGacuUCGGGCGCCAGuuUCUgGGCGa -3'
miRNA:   3'- aGGCU---AGCUUGUGGUUuuAGGgUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.