miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 57324 0.69 0.994961
Target:  5'- -aCGcUCGGACACCu--GUCCgAGCGc -3'
miRNA:   3'- agGCuAGCUUGUGGuuuUAGGgUCGU- -5'
14453 3' -49.7 NC_003521.1 + 59936 0.75 0.882791
Target:  5'- cUCCGAcgUGGACGCCGAucaacagCCCGGCGc -3'
miRNA:   3'- -AGGCUa-GCUUGUGGUUuua----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 64765 0.68 0.996843
Target:  5'- gCCGG-CGcGGCACCGGgcGAUCCCAaGCGc -3'
miRNA:   3'- aGGCUaGC-UUGUGGUU--UUAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 64904 0.67 0.998414
Target:  5'- cUCCGGcuccUCGG--GCCAGGucCCCAGCAg -3'
miRNA:   3'- -AGGCU----AGCUugUGGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 70921 0.67 0.998909
Target:  5'- gCCG-UC-AGCGCCAGcagGGUCCaCAGCAg -3'
miRNA:   3'- aGGCuAGcUUGUGGUU---UUAGG-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 78509 0.68 0.997043
Target:  5'- gCCGAcCGGACACgcgacgcggauuccgCGGAcUCCCGGCGu -3'
miRNA:   3'- aGGCUaGCUUGUG---------------GUUUuAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 78871 0.69 0.993263
Target:  5'- gCCGGUCGAugACCAGGcgCgUCAGgGg -3'
miRNA:   3'- aGGCUAGCUugUGGUUUuaG-GGUCgU- -5'
14453 3' -49.7 NC_003521.1 + 79068 0.69 0.993167
Target:  5'- gUCCGGggcUCGGGCACCAGc-UCCCccacgcuGGCGa -3'
miRNA:   3'- -AGGCU---AGCUUGUGGUUuuAGGG-------UCGU- -5'
14453 3' -49.7 NC_003521.1 + 81039 0.71 0.979314
Target:  5'- gUCUGGUUGAuguugacgcacuGCGCCAAc--CCCAGCAc -3'
miRNA:   3'- -AGGCUAGCU------------UGUGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 85628 0.68 0.996294
Target:  5'- gCCGAgaggUCGuGCACCuccccCCCGGCAg -3'
miRNA:   3'- aGGCU----AGCuUGUGGuuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 91386 0.68 0.996843
Target:  5'- cCCGGgccCGGACccccgACCcAAAUCCCGGCc -3'
miRNA:   3'- aGGCUa--GCUUG-----UGGuUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 92125 0.66 0.999683
Target:  5'- cCCGGgugcgguUCGGGCGgCGGGGcuUCCCGGCu -3'
miRNA:   3'- aGGCU-------AGCUUGUgGUUUU--AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 92668 0.66 0.999403
Target:  5'- cCCGGUCGAGCAgCCucggcGAGGUgCCGGg- -3'
miRNA:   3'- aGGCUAGCUUGU-GG-----UUUUAgGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 92941 1.1 0.016552
Target:  5'- uUCCGAUCGAACACCAAAAUCCCAGCAc -3'
miRNA:   3'- -AGGCUAGCUUGUGGUUUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 93477 0.66 0.999612
Target:  5'- cCCGaAUCGGACGaggacgaagaguCCGAGGgcgCCUAGCGc -3'
miRNA:   3'- aGGC-UAGCUUGU------------GGUUUUa--GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 100622 0.66 0.999403
Target:  5'- -gCGAcUCGGcCGCCAAGAUCCaggAGCGc -3'
miRNA:   3'- agGCU-AGCUuGUGGUUUUAGGg--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 103696 0.66 0.999612
Target:  5'- gUCCGAgcgucCGAACGCgggcuCGGAA-CCUAGCAg -3'
miRNA:   3'- -AGGCUa----GCUUGUG-----GUUUUaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 103939 0.69 0.993903
Target:  5'- gUCGAccgCGAACACCGgcgccacccgccgcGAGUCCguGCAu -3'
miRNA:   3'- aGGCUa--GCUUGUGGU--------------UUUAGGguCGU- -5'
14453 3' -49.7 NC_003521.1 + 104244 0.7 0.98851
Target:  5'- -gUGAUCGAGCACCAGG--UgCAGCGg -3'
miRNA:   3'- agGCUAGCUUGUGGUUUuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 107643 0.69 0.995669
Target:  5'- cCCGAUCGccgaggcCGCCAcugcugguGUCCCGGCu -3'
miRNA:   3'- aGGCUAGCuu-----GUGGUuu------UAGGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.