miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 178719 0.78 0.754323
Target:  5'- cCCGcgCGGGCGCCGAAGcguUCCCGGUu -3'
miRNA:   3'- aGGCuaGCUUGUGGUUUU---AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 78509 0.68 0.997043
Target:  5'- gCCGAcCGGACACgcgacgcggauuccgCGGAcUCCCGGCGu -3'
miRNA:   3'- aGGCUaGCUUGUG---------------GUUUuAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 171566 0.68 0.997323
Target:  5'- aCCGcuugccacGUCGGcCACCAucAUCaCCAGCAc -3'
miRNA:   3'- aGGC--------UAGCUuGUGGUuuUAG-GGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 153140 0.66 0.99969
Target:  5'- gCCucUCGGGCGCCuccacgCUCAGCAa -3'
miRNA:   3'- aGGcuAGCUUGUGGuuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 47539 0.71 0.976956
Target:  5'- gCCGAcUCcGACGCCc--GUCCCGGCAc -3'
miRNA:   3'- aGGCU-AGcUUGUGGuuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 196571 0.71 0.981488
Target:  5'- cUCCGG-CGuGACGCCGGAcUCCCGcGCAc -3'
miRNA:   3'- -AGGCUaGC-UUGUGGUUUuAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 179975 0.7 0.986988
Target:  5'- gCUGcgCGAACACCugcggGAAGUCCUGGUg -3'
miRNA:   3'- aGGCuaGCUUGUGG-----UUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 104244 0.7 0.98851
Target:  5'- -gUGAUCGAGCACCAGG--UgCAGCGg -3'
miRNA:   3'- agGCUAGCUUGUGGUUUuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 172306 0.69 0.994162
Target:  5'- gUCCGGugUCGGugGCGCCAGgccGGUCgCGGCGg -3'
miRNA:   3'- -AGGCU--AGCU--UGUGGUU---UUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 166177 0.68 0.996843
Target:  5'- gCCGAgCGGcGCuCCAGGGUCCCGcGCAc -3'
miRNA:   3'- aGGCUaGCU-UGuGGUUUUAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 107643 0.69 0.995669
Target:  5'- cCCGAUCGccgaggcCGCCAcugcugguGUCCCGGCu -3'
miRNA:   3'- aGGCUAGCuu-----GUGGUuu------UAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 140582 0.69 0.993263
Target:  5'- cUCGucGUCGGGCACCucg--CCCAGCu -3'
miRNA:   3'- aGGC--UAGCUUGUGGuuuuaGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 209081 0.75 0.905557
Target:  5'- gCCGGUCGAgGCGgCGGAggcgguggccgcggcGUCCCAGCAc -3'
miRNA:   3'- aGGCUAGCU-UGUgGUUU---------------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 7739 0.68 0.996843
Target:  5'- gCgGcgCGAGCGgCGGAggcggcggcaGUCCCAGCAg -3'
miRNA:   3'- aGgCuaGCUUGUgGUUU----------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 112087 0.72 0.968702
Target:  5'- -aCGGgcUCGGGCGCCAAGAUCagCGGCGu -3'
miRNA:   3'- agGCU--AGCUUGUGGUUUUAGg-GUCGU- -5'
14453 3' -49.7 NC_003521.1 + 179855 0.69 0.992257
Target:  5'- cCUGGUCGGGCAUCAGGA-UgCGGCAc -3'
miRNA:   3'- aGGCUAGCUUGUGGUUUUaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 50326 0.68 0.996843
Target:  5'- -gCGaAUCGGACGCCAAGuaccguuUCCCGGg- -3'
miRNA:   3'- agGC-UAGCUUGUGGUUUu------AGGGUCgu -5'
14453 3' -49.7 NC_003521.1 + 172216 0.68 0.997323
Target:  5'- gCCGAgucgaaGAAgGCCGAGGUCCC-GUAg -3'
miRNA:   3'- aGGCUag----CUUgUGGUUUUAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 182368 0.72 0.971657
Target:  5'- cCUGGUCGAcgugguGCGCgGAAAguucgCCCGGCAg -3'
miRNA:   3'- aGGCUAGCU------UGUGgUUUUa----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 201780 0.7 0.985317
Target:  5'- aUUCGucUGGGCAcCCAGAcgCCCAGCAa -3'
miRNA:   3'- -AGGCuaGCUUGU-GGUUUuaGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.