miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 126092 0.68 0.821318
Target:  5'- aCCCCCaCGGCGugCCggauccagcgguCGAucucgUCGUGCCGg -3'
miRNA:   3'- -GGGGG-GUCGUugGG------------GCU-----AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 121454 0.68 0.813069
Target:  5'- uCUUCCCGGCGGacauCCCCGG-CGUGuCCAUg -3'
miRNA:   3'- -GGGGGGUCGUU----GGGGCUaGCAU-GGUA- -5'
14453 5' -58.3 NC_003521.1 + 152606 0.69 0.787453
Target:  5'- cCUCCUCGGC-GCCCUGGUUGgucACCAg -3'
miRNA:   3'- -GGGGGGUCGuUGGGGCUAGCa--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 117623 0.69 0.77865
Target:  5'- -gUCCCAGCGACCCgGuGUCGUuCCGc -3'
miRNA:   3'- ggGGGGUCGUUGGGgC-UAGCAuGGUa -5'
14453 5' -58.3 NC_003521.1 + 57589 0.69 0.77865
Target:  5'- -gCgCCGGCGgcgaACCCCGAgucagCGUGCCGUc -3'
miRNA:   3'- ggGgGGUCGU----UGGGGCUa----GCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 201308 0.69 0.769727
Target:  5'- uCUCgCCGcGCGACCCCugGAUCGUGCUg- -3'
miRNA:   3'- -GGGgGGU-CGUUGGGG--CUAGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 1080 0.69 0.769727
Target:  5'- uCUCgCCGcGCGACCCCugGAUCGUGCUg- -3'
miRNA:   3'- -GGGgGGU-CGUUGGGG--CUAGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 62921 0.69 0.751554
Target:  5'- gCCCUCCcGCucGCCCCGcUCGUuccGCCAc -3'
miRNA:   3'- -GGGGGGuCGu-UGGGGCuAGCA---UGGUa -5'
14453 5' -58.3 NC_003521.1 + 136810 0.69 0.751554
Target:  5'- gCCCgCCGaCGACCCCGG-CGUGCgCAUg -3'
miRNA:   3'- -GGGgGGUcGUUGGGGCUaGCAUG-GUA- -5'
14453 5' -58.3 NC_003521.1 + 85434 0.69 0.74232
Target:  5'- gCCCCCCGcCGGCCUCG-UCGUccgcGCCGg -3'
miRNA:   3'- -GGGGGGUcGUUGGGGCuAGCA----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 235114 0.7 0.732061
Target:  5'- aCCCCCUAGCGauagacaGCCCCcgggaugguGAUCGccACCAc -3'
miRNA:   3'- -GGGGGGUCGU-------UGGGG---------CUAGCa-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 121025 0.7 0.723596
Target:  5'- cCUCCUCGGCGGCgCCGAccUCGUcGCCGc -3'
miRNA:   3'- -GGGGGGUCGUUGgGGCU--AGCA-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 150849 0.7 0.704586
Target:  5'- aCCCgCCGGUugAACCCCGAaCGgccGCCAg -3'
miRNA:   3'- -GGGgGGUCG--UUGGGGCUaGCa--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 171052 0.7 0.704586
Target:  5'- aCCCCCGGCucGCCcguCCGAUCaugcacuuGUGCCAc -3'
miRNA:   3'- gGGGGGUCGu-UGG---GGCUAG--------CAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 89726 0.71 0.665959
Target:  5'- aUCCCCCAGCGGCCCgacccgaggGGUCGgcgguCCAg -3'
miRNA:   3'- -GGGGGGUCGUUGGGg--------CUAGCau---GGUa -5'
14453 5' -58.3 NC_003521.1 + 155253 0.71 0.6367
Target:  5'- gCCCCCCAguuccauccGCAACCCC--UCGUACg-- -3'
miRNA:   3'- -GGGGGGU---------CGUUGGGGcuAGCAUGgua -5'
14453 5' -58.3 NC_003521.1 + 71785 0.71 0.633769
Target:  5'- uCCCCCCGGaCGACCaggaCGucacgcacgucaagAUCGUGCCGg -3'
miRNA:   3'- -GGGGGGUC-GUUGGg---GC--------------UAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 92440 0.72 0.626931
Target:  5'- aCCCCCCAGCcuccccgcACCCCGcUCGgcuUGCCc- -3'
miRNA:   3'- -GGGGGGUCGu-------UGGGGCuAGC---AUGGua -5'
14453 5' -58.3 NC_003521.1 + 184573 0.72 0.615213
Target:  5'- gCCUgCCGGCcugccucAGCCCCGAcauggcaUCGUGCCAc -3'
miRNA:   3'- -GGGgGGUCG-------UUGGGGCU-------AGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 141146 0.72 0.60741
Target:  5'- aCCUUCGGCAACCCCGugcacCGgGCCAUg -3'
miRNA:   3'- gGGGGGUCGUUGGGGCua---GCaUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.