miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 3' -58 NC_003521.1 + 83616 0.67 0.86693
Target:  5'- aCGGCGGGAcUGGagUCGCUC-CCACc- -3'
miRNA:   3'- -GUCGCCCU-ACUagAGCGGGuGGUGca -5'
14479 3' -58 NC_003521.1 + 109307 0.67 0.86693
Target:  5'- gAGCaGGuacuUCUCGCCCGUCACGUa -3'
miRNA:   3'- gUCGcCCuacuAGAGCGGGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 76018 0.67 0.860411
Target:  5'- -cGCGGGcgcuccggGAUCguccccgacgacccgUGCCCGCCGCGUc -3'
miRNA:   3'- guCGCCCua------CUAGa--------------GCGGGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 101686 0.67 0.852235
Target:  5'- gGGCGaGGGgcaGAUCUUGUCCugUACGc -3'
miRNA:   3'- gUCGC-CCUa--CUAGAGCGGGugGUGCa -5'
14479 3' -58 NC_003521.1 + 109248 0.67 0.852235
Target:  5'- -cGCGuGAUGAucaggcUCUgGCCCACCAcCGUg -3'
miRNA:   3'- guCGCcCUACU------AGAgCGGGUGGU-GCA- -5'
14479 3' -58 NC_003521.1 + 67610 0.68 0.844609
Target:  5'- aAGCGGGA-GAUCaaGCCCgACCcCGa -3'
miRNA:   3'- gUCGCCCUaCUAGagCGGG-UGGuGCa -5'
14479 3' -58 NC_003521.1 + 74935 0.68 0.836806
Target:  5'- -cGCGGGGUGGUgUa-CCCGCCGCc- -3'
miRNA:   3'- guCGCCCUACUAgAgcGGGUGGUGca -5'
14479 3' -58 NC_003521.1 + 5665 0.68 0.836806
Target:  5'- gGGUGGGG-GGUCgagacacgggCGCCCGuCCGCGg -3'
miRNA:   3'- gUCGCCCUaCUAGa---------GCGGGU-GGUGCa -5'
14479 3' -58 NC_003521.1 + 127966 0.68 0.836806
Target:  5'- -cGCGGGAgcagcUGGggcagCUcggccaugaCGCCCGCCACGg -3'
miRNA:   3'- guCGCCCU-----ACUa----GA---------GCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 208291 0.68 0.820694
Target:  5'- gAGCGGGucuaucgcGAUC-CGCUCACCACc- -3'
miRNA:   3'- gUCGCCCua------CUAGaGCGGGUGGUGca -5'
14479 3' -58 NC_003521.1 + 195789 0.68 0.820694
Target:  5'- gAGa-GGAagaaGGUCUCGCCCugCACGg -3'
miRNA:   3'- gUCgcCCUa---CUAGAGCGGGugGUGCa -5'
14479 3' -58 NC_003521.1 + 123496 0.68 0.812399
Target:  5'- cCGGCGGGGUGucGUCgUCGCCgCuGCCGCc- -3'
miRNA:   3'- -GUCGCCCUAC--UAG-AGCGG-G-UGGUGca -5'
14479 3' -58 NC_003521.1 + 61995 0.68 0.810721
Target:  5'- gCAGCGGGAcaucuucucgucGAUCgaccCGCCCGCCGgGc -3'
miRNA:   3'- -GUCGCCCUa-----------CUAGa---GCGGGUGGUgCa -5'
14479 3' -58 NC_003521.1 + 212229 0.68 0.803953
Target:  5'- gUAGCGGGugaGGUCgCGCUCGCCGgGg -3'
miRNA:   3'- -GUCGCCCua-CUAGaGCGGGUGGUgCa -5'
14479 3' -58 NC_003521.1 + 112339 0.69 0.786639
Target:  5'- aCGGCGGGGUGA--UUGCCaCACCguACGc -3'
miRNA:   3'- -GUCGCCCUACUagAGCGG-GUGG--UGCa -5'
14479 3' -58 NC_003521.1 + 69413 0.69 0.786639
Target:  5'- -cGCGGGAcggUGA-CggcgCGCaCCACCACGg -3'
miRNA:   3'- guCGCCCU---ACUaGa---GCG-GGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 123576 0.69 0.786639
Target:  5'- uGGCGGGAUGGcggCggCGCCgggagcCGCCGCGg -3'
miRNA:   3'- gUCGCCCUACUa--Ga-GCGG------GUGGUGCa -5'
14479 3' -58 NC_003521.1 + 126267 0.69 0.786639
Target:  5'- gCAGCGGGA---UCUCGCa-ACCGCGc -3'
miRNA:   3'- -GUCGCCCUacuAGAGCGggUGGUGCa -5'
14479 3' -58 NC_003521.1 + 56819 0.69 0.777788
Target:  5'- gGGUGGGAacGUCUaaCCCACCACGc -3'
miRNA:   3'- gUCGCCCUacUAGAgcGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 115569 0.69 0.777788
Target:  5'- -uGCGcGGAcguUGAUCUCGCCC-CCgugcGCGUc -3'
miRNA:   3'- guCGC-CCU---ACUAGAGCGGGuGG----UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.