miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 3' -58 NC_003521.1 + 111581 0.66 0.923003
Target:  5'- cCGGCGGGuuccggacugcGUGGuagucuuccUCUCGcCCCGCgGCGa -3'
miRNA:   3'- -GUCGCCC-----------UACU---------AGAGC-GGGUGgUGCa -5'
14479 3' -58 NC_003521.1 + 111603 0.67 0.87399
Target:  5'- cCAGCGGcGccGGaCU-GCCCACCACGc -3'
miRNA:   3'- -GUCGCC-CuaCUaGAgCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 112339 0.69 0.786639
Target:  5'- aCGGCGGGGUGA--UUGCCaCACCguACGc -3'
miRNA:   3'- -GUCGCCCUACUagAGCGG-GUGG--UGCa -5'
14479 3' -58 NC_003521.1 + 112369 0.69 0.759732
Target:  5'- gCGGCGGcuGcgGcGUCUCGUCCACCugGc -3'
miRNA:   3'- -GUCGCC--CuaC-UAGAGCGGGUGGugCa -5'
14479 3' -58 NC_003521.1 + 115569 0.69 0.777788
Target:  5'- -uGCGcGGAcguUGAUCUCGCCC-CCgugcGCGUc -3'
miRNA:   3'- guCGC-CCU---ACUAGAGCGGGuGG----UGCA- -5'
14479 3' -58 NC_003521.1 + 115851 0.66 0.912035
Target:  5'- aGGCGGGcgGcgCaCGCCUcgucaaacacgGCCGCGUu -3'
miRNA:   3'- gUCGCCCuaCuaGaGCGGG-----------UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 120037 0.71 0.693695
Target:  5'- gAGCuGGucGcgCUCGCCCACCGCGc -3'
miRNA:   3'- gUCGcCCuaCuaGAGCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 123496 0.68 0.812399
Target:  5'- cCGGCGGGGUGucGUCgUCGCCgCuGCCGCc- -3'
miRNA:   3'- -GUCGCCCUAC--UAG-AGCGG-G-UGGUGca -5'
14479 3' -58 NC_003521.1 + 123576 0.69 0.786639
Target:  5'- uGGCGGGAUGGcggCggCGCCgggagcCGCCGCGg -3'
miRNA:   3'- gUCGCCCUACUa--Ga-GCGG------GUGGUGCa -5'
14479 3' -58 NC_003521.1 + 125416 1.07 0.004138
Target:  5'- gCAGCGGGAUGAUCUCGCCCACCACGUa -3'
miRNA:   3'- -GUCGCCCUACUAGAGCGGGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 126267 0.69 0.786639
Target:  5'- gCAGCGGGA---UCUCGCa-ACCGCGc -3'
miRNA:   3'- -GUCGCCCUacuAGAGCGggUGGUGCa -5'
14479 3' -58 NC_003521.1 + 126390 0.67 0.878813
Target:  5'- -cGCGGGucuggugccgccacaGGUCUCgGCCCugCGCGa -3'
miRNA:   3'- guCGCCCua-------------CUAGAG-CGGGugGUGCa -5'
14479 3' -58 NC_003521.1 + 127829 0.66 0.917628
Target:  5'- aGGUGcccGGGUGGUaguggCGCCCGCCGCu- -3'
miRNA:   3'- gUCGC---CCUACUAga---GCGGGUGGUGca -5'
14479 3' -58 NC_003521.1 + 127966 0.68 0.836806
Target:  5'- -cGCGGGAgcagcUGGggcagCUcggccaugaCGCCCGCCACGg -3'
miRNA:   3'- guCGCCCU-----ACUa----GA---------GCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 129314 0.72 0.61944
Target:  5'- gCGGCGGGAaGAggUCGCCCagcaggcgguugagcGCCGCGa -3'
miRNA:   3'- -GUCGCCCUaCUagAGCGGG---------------UGGUGCa -5'
14479 3' -58 NC_003521.1 + 129562 0.66 0.922475
Target:  5'- aCGGCGGGcccgacgAUGGcugCUcCGCCgCGCCGCGc -3'
miRNA:   3'- -GUCGCCC-------UACUa--GA-GCGG-GUGGUGCa -5'
14479 3' -58 NC_003521.1 + 135962 0.75 0.463238
Target:  5'- gGGCGuGGAcagggucgUGAUCUCGCCCagcgugucgggggGCCGCGUc -3'
miRNA:   3'- gUCGC-CCU--------ACUAGAGCGGG-------------UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 136788 0.67 0.88085
Target:  5'- aCAGCGGGcucacGGUCacgcUGCCCGCCgACGa -3'
miRNA:   3'- -GUCGCCCua---CUAGa---GCGGGUGG-UGCa -5'
14479 3' -58 NC_003521.1 + 150709 0.66 0.893958
Target:  5'- cCGGCGGcGAcUGGcUCUCGgCCguggGCCACGUc -3'
miRNA:   3'- -GUCGCC-CU-ACU-AGAGCgGG----UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 151563 0.66 0.912035
Target:  5'- -cGCGGGc--GUCUCGUgUCACCGCGUc -3'
miRNA:   3'- guCGCCCuacUAGAGCG-GGUGGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.