Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14479 | 3' | -58 | NC_003521.1 | + | 5665 | 0.68 | 0.836806 |
Target: 5'- gGGUGGGG-GGUCgagacacgggCGCCCGuCCGCGg -3' miRNA: 3'- gUCGCCCUaCUAGa---------GCGGGU-GGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 16119 | 0.66 | 0.912035 |
Target: 5'- gGGCGGGAcgUGAaCUuccacaCGCCCgggcGCCACGc -3' miRNA: 3'- gUCGCCCU--ACUaGA------GCGGG----UGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 20279 | 0.69 | 0.759732 |
Target: 5'- uCAGCGGaGugcggugGAUCUCGCCggCGCCAUGc -3' miRNA: 3'- -GUCGCC-Cua-----CUAGAGCGG--GUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 34840 | 0.71 | 0.684007 |
Target: 5'- uCAGCagguaGGGcgaGUGAgagC-CGCCCACCACGUa -3' miRNA: 3'- -GUCG-----CCC---UACUa--GaGCGGGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 46067 | 0.71 | 0.654741 |
Target: 5'- gGGCGGGAUGAggUCGCgaCGCCcgGCGUc -3' miRNA: 3'- gUCGCCCUACUagAGCGg-GUGG--UGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 53432 | 0.66 | 0.893958 |
Target: 5'- gCAGCGGaa-GGUCUCGUUCACCAg-- -3' miRNA: 3'- -GUCGCCcuaCUAGAGCGGGUGGUgca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 56819 | 0.69 | 0.777788 |
Target: 5'- gGGUGGGAacGUCUaaCCCACCACGc -3' miRNA: 3'- gUCGCCCUacUAGAgcGGGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 61995 | 0.68 | 0.810721 |
Target: 5'- gCAGCGGGAcaucuucucgucGAUCgaccCGCCCGCCGgGc -3' miRNA: 3'- -GUCGCCCUa-----------CUAGa---GCGGGUGGUgCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 67610 | 0.68 | 0.844609 |
Target: 5'- aAGCGGGA-GAUCaaGCCCgACCcCGa -3' miRNA: 3'- gUCGCCCUaCUAGagCGGG-UGGuGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 69413 | 0.69 | 0.786639 |
Target: 5'- -cGCGGGAcggUGA-CggcgCGCaCCACCACGg -3' miRNA: 3'- guCGCCCU---ACUaGa---GCG-GGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 74935 | 0.68 | 0.836806 |
Target: 5'- -cGCGGGGUGGUgUa-CCCGCCGCc- -3' miRNA: 3'- guCGCCCUACUAgAgcGGGUGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 76018 | 0.67 | 0.860411 |
Target: 5'- -cGCGGGcgcuccggGAUCguccccgacgacccgUGCCCGCCGCGUc -3' miRNA: 3'- guCGCCCua------CUAGa--------------GCGGGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 80597 | 0.71 | 0.674281 |
Target: 5'- gCAGCGGGuUGAccacCUUGUCCuCCACGUa -3' miRNA: 3'- -GUCGCCCuACUa---GAGCGGGuGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 83616 | 0.67 | 0.86693 |
Target: 5'- aCGGCGGGAcUGGagUCGCUC-CCACc- -3' miRNA: 3'- -GUCGCCCU-ACUagAGCGGGuGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 86770 | 0.66 | 0.906224 |
Target: 5'- aGGCGcGaGAgcuUGAUCUCcauggGCaCCACCGCGUa -3' miRNA: 3'- gUCGC-C-CU---ACUAGAG-----CG-GGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 100231 | 0.7 | 0.703335 |
Target: 5'- aAGCGGagc-GUCUCGCCgGCCGCGa -3' miRNA: 3'- gUCGCCcuacUAGAGCGGgUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 101196 | 0.67 | 0.887508 |
Target: 5'- cCGGCGGGcgGAUCUUGaCCGagaugugCACGUu -3' miRNA: 3'- -GUCGCCCuaCUAGAGCgGGUg------GUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 101686 | 0.67 | 0.852235 |
Target: 5'- gGGCGaGGGgcaGAUCUUGUCCugUACGc -3' miRNA: 3'- gUCGC-CCUa--CUAGAGCGGGugGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 109248 | 0.67 | 0.852235 |
Target: 5'- -cGCGuGAUGAucaggcUCUgGCCCACCAcCGUg -3' miRNA: 3'- guCGCcCUACU------AGAgCGGGUGGU-GCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 109307 | 0.67 | 0.86693 |
Target: 5'- gAGCaGGuacuUCUCGCCCGUCACGUa -3' miRNA: 3'- gUCGcCCuacuAGAGCGGGUGGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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