Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14479 | 3' | -58 | NC_003521.1 | + | 235129 | 0.7 | 0.703334 |
Target: 5'- aCAGCccccGGGAUGGUgaUCG-CCACCACGg -3' miRNA: 3'- -GUCG----CCCUACUAg-AGCgGGUGGUGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 228459 | 0.71 | 0.654741 |
Target: 5'- aGGCcGGAgGGUagcgaCUCGCCCACCACGc -3' miRNA: 3'- gUCGcCCUaCUA-----GAGCGGGUGGUGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 226823 | 0.69 | 0.768816 |
Target: 5'- aCAGCGccAUGGggucCUCGCCCGCCGCc- -3' miRNA: 3'- -GUCGCccUACUa---GAGCGGGUGGUGca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 223110 | 0.67 | 0.887508 |
Target: 5'- -uGCGGGAUGGcggccgUCUCGCgCAgCACc- -3' miRNA: 3'- guCGCCCUACU------AGAGCGgGUgGUGca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 223005 | 0.66 | 0.893958 |
Target: 5'- uGGCGGuGggGGUCgUCGUCCGCCGg-- -3' miRNA: 3'- gUCGCC-CuaCUAG-AGCGGGUGGUgca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 212229 | 0.68 | 0.803953 |
Target: 5'- gUAGCGGGugaGGUCgCGCUCGCCGgGg -3' miRNA: 3'- -GUCGCCCua-CUAGaGCGGGUGGUgCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 211611 | 0.71 | 0.654741 |
Target: 5'- gCAGCGGGAUG-UCuUCGCUgaCACCGCc- -3' miRNA: 3'- -GUCGCCCUACuAG-AGCGG--GUGGUGca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 208291 | 0.68 | 0.820694 |
Target: 5'- gAGCGGGucuaucgcGAUC-CGCUCACCACc- -3' miRNA: 3'- gUCGCCCua------CUAGaGCGGGUGGUGca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 195789 | 0.68 | 0.820694 |
Target: 5'- gAGa-GGAagaaGGUCUCGCCCugCACGg -3' miRNA: 3'- gUCgcCCUa---CUAGAGCGGGugGUGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 191094 | 0.75 | 0.473089 |
Target: 5'- gCGGCGGGcUGcGUCUCGUCCACCAg-- -3' miRNA: 3'- -GUCGCCCuAC-UAGAGCGGGUGGUgca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 178814 | 0.66 | 0.917628 |
Target: 5'- cCGGCGGGcgGGUCgaUCGacgagaagauguCCCGCUGCGc -3' miRNA: 3'- -GUCGCCCuaCUAG--AGC------------GGGUGGUGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 175323 | 0.66 | 0.912035 |
Target: 5'- aCAGCGcucGAUGAaggUCGCCUGCCugGUc -3' miRNA: 3'- -GUCGCc--CUACUag-AGCGGGUGGugCA- -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 172546 | 0.67 | 0.86693 |
Target: 5'- aGGCGGGG-GAUCUCGUgCCGCUgucccggggucgGCGg -3' miRNA: 3'- gUCGCCCUaCUAGAGCG-GGUGG------------UGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 167289 | 0.66 | 0.923003 |
Target: 5'- gAGCGuGAUGuUCUCGUUCuCCACGg -3' miRNA: 3'- gUCGCcCUACuAGAGCGGGuGGUGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 166740 | 0.72 | 0.59595 |
Target: 5'- uGGCGGGGaaGAcCUCGCCCGCCAg-- -3' miRNA: 3'- gUCGCCCUa-CUaGAGCGGGUGGUgca -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 165754 | 0.66 | 0.917628 |
Target: 5'- gGGCGGcGgcGG-CUUGCCCAUCAuCGUg -3' miRNA: 3'- gUCGCC-CuaCUaGAGCGGGUGGU-GCA- -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 151563 | 0.66 | 0.912035 |
Target: 5'- -cGCGGGc--GUCUCGUgUCACCGCGUc -3' miRNA: 3'- guCGCCCuacUAGAGCG-GGUGGUGCA- -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 150709 | 0.66 | 0.893958 |
Target: 5'- cCGGCGGcGAcUGGcUCUCGgCCguggGCCACGUc -3' miRNA: 3'- -GUCGCC-CU-ACU-AGAGCgGG----UGGUGCA- -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 136788 | 0.67 | 0.88085 |
Target: 5'- aCAGCGGGcucacGGUCacgcUGCCCGCCgACGa -3' miRNA: 3'- -GUCGCCCua---CUAGa---GCGGGUGG-UGCa -5' |
|||||||
14479 | 3' | -58 | NC_003521.1 | + | 135962 | 0.75 | 0.463238 |
Target: 5'- gGGCGuGGAcagggucgUGAUCUCGCCCagcgugucgggggGCCGCGUc -3' miRNA: 3'- gUCGC-CCU--------ACUAGAGCGGG-------------UGGUGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home