miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 3' -58 NC_003521.1 + 125416 1.07 0.004138
Target:  5'- gCAGCGGGAUGAUCUCGCCCACCACGUa -3'
miRNA:   3'- -GUCGCCCUACUAGAGCGGGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 135962 0.75 0.463238
Target:  5'- gGGCGuGGAcagggucgUGAUCUCGCCCagcgugucgggggGCCGCGUc -3'
miRNA:   3'- gUCGC-CCU--------ACUAGAGCGGG-------------UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 191094 0.75 0.473089
Target:  5'- gCGGCGGGcUGcGUCUCGUCCACCAg-- -3'
miRNA:   3'- -GUCGCCCuAC-UAGAGCGGGUGGUgca -5'
14479 3' -58 NC_003521.1 + 166740 0.72 0.59595
Target:  5'- uGGCGGGGaaGAcCUCGCCCGCCAg-- -3'
miRNA:   3'- gUCGCCCUa-CUaGAGCGGGUGGUgca -5'
14479 3' -58 NC_003521.1 + 129314 0.72 0.61944
Target:  5'- gCGGCGGGAaGAggUCGCCCagcaggcgguugagcGCCGCGa -3'
miRNA:   3'- -GUCGCCCUaCUagAGCGGG---------------UGGUGCa -5'
14479 3' -58 NC_003521.1 + 211611 0.71 0.654741
Target:  5'- gCAGCGGGAUG-UCuUCGCUgaCACCGCc- -3'
miRNA:   3'- -GUCGCCCUACuAG-AGCGG--GUGGUGca -5'
14479 3' -58 NC_003521.1 + 46067 0.71 0.654741
Target:  5'- gGGCGGGAUGAggUCGCgaCGCCcgGCGUc -3'
miRNA:   3'- gUCGCCCUACUagAGCGg-GUGG--UGCA- -5'
14479 3' -58 NC_003521.1 + 228459 0.71 0.654741
Target:  5'- aGGCcGGAgGGUagcgaCUCGCCCACCACGc -3'
miRNA:   3'- gUCGcCCUaCUA-----GAGCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 80597 0.71 0.674281
Target:  5'- gCAGCGGGuUGAccacCUUGUCCuCCACGUa -3'
miRNA:   3'- -GUCGCCCuACUa---GAGCGGGuGGUGCA- -5'
14479 3' -58 NC_003521.1 + 34840 0.71 0.684007
Target:  5'- uCAGCagguaGGGcgaGUGAgagC-CGCCCACCACGUa -3'
miRNA:   3'- -GUCG-----CCC---UACUa--GaGCGGGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 120037 0.71 0.693695
Target:  5'- gAGCuGGucGcgCUCGCCCACCGCGc -3'
miRNA:   3'- gUCGcCCuaCuaGAGCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 235129 0.7 0.703334
Target:  5'- aCAGCccccGGGAUGGUgaUCG-CCACCACGg -3'
miRNA:   3'- -GUCG----CCCUACUAg-AGCgGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 100231 0.7 0.703335
Target:  5'- aAGCGGagc-GUCUCGCCgGCCGCGa -3'
miRNA:   3'- gUCGCCcuacUAGAGCGGgUGGUGCa -5'
14479 3' -58 NC_003521.1 + 20279 0.69 0.759732
Target:  5'- uCAGCGGaGugcggugGAUCUCGCCggCGCCAUGc -3'
miRNA:   3'- -GUCGCC-Cua-----CUAGAGCGG--GUGGUGCa -5'
14479 3' -58 NC_003521.1 + 112369 0.69 0.759732
Target:  5'- gCGGCGGcuGcgGcGUCUCGUCCACCugGc -3'
miRNA:   3'- -GUCGCC--CuaC-UAGAGCGGGUGGugCa -5'
14479 3' -58 NC_003521.1 + 226823 0.69 0.768816
Target:  5'- aCAGCGccAUGGggucCUCGCCCGCCGCc- -3'
miRNA:   3'- -GUCGCccUACUa---GAGCGGGUGGUGca -5'
14479 3' -58 NC_003521.1 + 115569 0.69 0.777788
Target:  5'- -uGCGcGGAcguUGAUCUCGCCC-CCgugcGCGUc -3'
miRNA:   3'- guCGC-CCU---ACUAGAGCGGGuGG----UGCA- -5'
14479 3' -58 NC_003521.1 + 56819 0.69 0.777788
Target:  5'- gGGUGGGAacGUCUaaCCCACCACGc -3'
miRNA:   3'- gUCGCCCUacUAGAgcGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 112339 0.69 0.786639
Target:  5'- aCGGCGGGGUGA--UUGCCaCACCguACGc -3'
miRNA:   3'- -GUCGCCCUACUagAGCGG-GUGG--UGCa -5'
14479 3' -58 NC_003521.1 + 69413 0.69 0.786639
Target:  5'- -cGCGGGAcggUGA-CggcgCGCaCCACCACGg -3'
miRNA:   3'- guCGCCCU---ACUaGa---GCG-GGUGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.