Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14479 | 3' | -58 | NC_003521.1 | + | 136788 | 0.67 | 0.88085 |
Target: 5'- aCAGCGGGcucacGGUCacgcUGCCCGCCgACGa -3' miRNA: 3'- -GUCGCCCua---CUAGa---GCGGGUGG-UGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 69413 | 0.69 | 0.786639 |
Target: 5'- -cGCGGGAcggUGA-CggcgCGCaCCACCACGg -3' miRNA: 3'- guCGCCCU---ACUaGa---GCG-GGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 112339 | 0.69 | 0.786639 |
Target: 5'- aCGGCGGGGUGA--UUGCCaCACCguACGc -3' miRNA: 3'- -GUCGCCCUACUagAGCGG-GUGG--UGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 61995 | 0.68 | 0.810721 |
Target: 5'- gCAGCGGGAcaucuucucgucGAUCgaccCGCCCGCCGgGc -3' miRNA: 3'- -GUCGCCCUa-----------CUAGa---GCGGGUGGUgCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 123496 | 0.68 | 0.812399 |
Target: 5'- cCGGCGGGGUGucGUCgUCGCCgCuGCCGCc- -3' miRNA: 3'- -GUCGCCCUAC--UAG-AGCGG-G-UGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 5665 | 0.68 | 0.836806 |
Target: 5'- gGGUGGGG-GGUCgagacacgggCGCCCGuCCGCGg -3' miRNA: 3'- gUCGCCCUaCUAGa---------GCGGGU-GGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 101686 | 0.67 | 0.852235 |
Target: 5'- gGGCGaGGGgcaGAUCUUGUCCugUACGc -3' miRNA: 3'- gUCGC-CCUa--CUAGAGCGGGugGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 109248 | 0.67 | 0.852235 |
Target: 5'- -cGCGuGAUGAucaggcUCUgGCCCACCAcCGUg -3' miRNA: 3'- guCGCcCUACU------AGAgCGGGUGGU-GCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 109307 | 0.67 | 0.86693 |
Target: 5'- gAGCaGGuacuUCUCGCCCGUCACGUa -3' miRNA: 3'- gUCGcCCuacuAGAGCGGGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 226823 | 0.69 | 0.768816 |
Target: 5'- aCAGCGccAUGGggucCUCGCCCGCCGCc- -3' miRNA: 3'- -GUCGCccUACUa---GAGCGGGUGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 112369 | 0.69 | 0.759732 |
Target: 5'- gCGGCGGcuGcgGcGUCUCGUCCACCugGc -3' miRNA: 3'- -GUCGCC--CuaC-UAGAGCGGGUGGugCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 235129 | 0.7 | 0.703334 |
Target: 5'- aCAGCccccGGGAUGGUgaUCG-CCACCACGg -3' miRNA: 3'- -GUCG----CCCUACUAg-AGCgGGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 191094 | 0.75 | 0.473089 |
Target: 5'- gCGGCGGGcUGcGUCUCGUCCACCAg-- -3' miRNA: 3'- -GUCGCCCuAC-UAGAGCGGGUGGUgca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 166740 | 0.72 | 0.59595 |
Target: 5'- uGGCGGGGaaGAcCUCGCCCGCCAg-- -3' miRNA: 3'- gUCGCCCUa-CUaGAGCGGGUGGUgca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 211611 | 0.71 | 0.654741 |
Target: 5'- gCAGCGGGAUG-UCuUCGCUgaCACCGCc- -3' miRNA: 3'- -GUCGCCCUACuAG-AGCGG--GUGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 46067 | 0.71 | 0.654741 |
Target: 5'- gGGCGGGAUGAggUCGCgaCGCCcgGCGUc -3' miRNA: 3'- gUCGCCCUACUagAGCGg-GUGG--UGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 228459 | 0.71 | 0.654741 |
Target: 5'- aGGCcGGAgGGUagcgaCUCGCCCACCACGc -3' miRNA: 3'- gUCGcCCUaCUA-----GAGCGGGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 80597 | 0.71 | 0.674281 |
Target: 5'- gCAGCGGGuUGAccacCUUGUCCuCCACGUa -3' miRNA: 3'- -GUCGCCCuACUa---GAGCGGGuGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 34840 | 0.71 | 0.684007 |
Target: 5'- uCAGCagguaGGGcgaGUGAgagC-CGCCCACCACGUa -3' miRNA: 3'- -GUCG-----CCC---UACUa--GaGCGGGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 120037 | 0.71 | 0.693695 |
Target: 5'- gAGCuGGucGcgCUCGCCCACCGCGc -3' miRNA: 3'- gUCGcCCuaCuaGAGCGGGUGGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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