Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14479 | 3' | -58 | NC_003521.1 | + | 135962 | 0.75 | 0.463238 |
Target: 5'- gGGCGuGGAcagggucgUGAUCUCGCCCagcgugucgggggGCCGCGUc -3' miRNA: 3'- gUCGC-CCU--------ACUAGAGCGGG-------------UGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 111603 | 0.67 | 0.87399 |
Target: 5'- cCAGCGGcGccGGaCU-GCCCACCACGc -3' miRNA: 3'- -GUCGCC-CuaCUaGAgCGGGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 16119 | 0.66 | 0.912035 |
Target: 5'- gGGCGGGAcgUGAaCUuccacaCGCCCgggcGCCACGc -3' miRNA: 3'- gUCGCCCU--ACUaGA------GCGGG----UGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 167289 | 0.66 | 0.923003 |
Target: 5'- gAGCGuGAUGuUCUCGUUCuCCACGg -3' miRNA: 3'- gUCGCcCUACuAGAGCGGGuGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 56819 | 0.69 | 0.777788 |
Target: 5'- gGGUGGGAacGUCUaaCCCACCACGc -3' miRNA: 3'- gUCGCCCUacUAGAgcGGGUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 115569 | 0.69 | 0.777788 |
Target: 5'- -uGCGcGGAcguUGAUCUCGCCC-CCgugcGCGUc -3' miRNA: 3'- guCGC-CCU---ACUAGAGCGGGuGG----UGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 126267 | 0.69 | 0.786639 |
Target: 5'- gCAGCGGGA---UCUCGCa-ACCGCGc -3' miRNA: 3'- -GUCGCCCUacuAGAGCGggUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 212229 | 0.68 | 0.803953 |
Target: 5'- gUAGCGGGugaGGUCgCGCUCGCCGgGg -3' miRNA: 3'- -GUCGCCCua-CUAGaGCGGGUGGUgCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 74935 | 0.68 | 0.836806 |
Target: 5'- -cGCGGGGUGGUgUa-CCCGCCGCc- -3' miRNA: 3'- guCGCCCUACUAgAgcGGGUGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 83616 | 0.67 | 0.86693 |
Target: 5'- aCGGCGGGAcUGGagUCGCUC-CCACc- -3' miRNA: 3'- -GUCGCCCU-ACUagAGCGGGuGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 67610 | 0.68 | 0.844609 |
Target: 5'- aAGCGGGA-GAUCaaGCCCgACCcCGa -3' miRNA: 3'- gUCGCCCUaCUAGagCGGG-UGGuGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 208291 | 0.68 | 0.820694 |
Target: 5'- gAGCGGGucuaucgcGAUC-CGCUCACCACc- -3' miRNA: 3'- gUCGCCCua------CUAGaGCGGGUGGUGca -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 129314 | 0.72 | 0.61944 |
Target: 5'- gCGGCGGGAaGAggUCGCCCagcaggcgguugagcGCCGCGa -3' miRNA: 3'- -GUCGCCCUaCUagAGCGGG---------------UGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 76018 | 0.67 | 0.860411 |
Target: 5'- -cGCGGGcgcuccggGAUCguccccgacgacccgUGCCCGCCGCGUc -3' miRNA: 3'- guCGCCCua------CUAGa--------------GCGGGUGGUGCA- -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 100231 | 0.7 | 0.703335 |
Target: 5'- aAGCGGagc-GUCUCGCCgGCCGCGa -3' miRNA: 3'- gUCGCCcuacUAGAGCGGgUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 195789 | 0.68 | 0.820694 |
Target: 5'- gAGa-GGAagaaGGUCUCGCCCugCACGg -3' miRNA: 3'- gUCgcCCUa---CUAGAGCGGGugGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 172546 | 0.67 | 0.86693 |
Target: 5'- aGGCGGGG-GAUCUCGUgCCGCUgucccggggucgGCGg -3' miRNA: 3'- gUCGCCCUaCUAGAGCG-GGUGG------------UGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 126390 | 0.67 | 0.878813 |
Target: 5'- -cGCGGGucuggugccgccacaGGUCUCgGCCCugCGCGa -3' miRNA: 3'- guCGCCCua-------------CUAGAG-CGGGugGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 20279 | 0.69 | 0.759732 |
Target: 5'- uCAGCGGaGugcggugGAUCUCGCCggCGCCAUGc -3' miRNA: 3'- -GUCGCC-Cua-----CUAGAGCGG--GUGGUGCa -5' |
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14479 | 3' | -58 | NC_003521.1 | + | 123576 | 0.69 | 0.786639 |
Target: 5'- uGGCGGGAUGGcggCggCGCCgggagcCGCCGCGg -3' miRNA: 3'- gUCGCCCUACUa--Ga-GCGG------GUGGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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