miRNA display CGI


Results 41 - 60 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 44198 0.66 0.825269
Target:  5'- cGGGCacccuGCGGACGCGCauccucaaCGgGCUGCu -3'
miRNA:   3'- -CCUGcac--CGCUUGCGCGg-------GCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226949 0.66 0.824487
Target:  5'- cGGCGaaauccaUGGCG-GCGcCGCCCGCagagacccCCGCg -3'
miRNA:   3'- cCUGC-------ACCGCuUGC-GCGGGCGc-------GGCG- -5'
14479 5' -61.6 NC_003521.1 + 213279 0.66 0.82292
Target:  5'- cGGACGacGGUGGagaccgucuacgccACcguggGCGCCuCGgGCCGCa -3'
miRNA:   3'- -CCUGCa-CCGCU--------------UG-----CGCGG-GCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 93979 0.66 0.82292
Target:  5'- gGGGCGgaGGCGAggacgAgGCGCCCcccagacaggcggaGCGCuCGUc -3'
miRNA:   3'- -CCUGCa-CCGCU-----UgCGCGGG--------------CGCG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 55182 0.66 0.822134
Target:  5'- cGGACGcugaaacacgaccGGCGAugGCaGUCCGC-CgCGCu -3'
miRNA:   3'- -CCUGCa------------CCGCUugCG-CGGGCGcG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 121330 0.66 0.820559
Target:  5'- cGGCaUGGCGAcaacggcuucacccuGCaCGcCCCGCGCgGCu -3'
miRNA:   3'- cCUGcACCGCU---------------UGcGC-GGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 101856 0.66 0.817389
Target:  5'- uGugGaUGGCGGACuGCGUCaUGgGuCCGCa -3'
miRNA:   3'- cCugC-ACCGCUUG-CGCGG-GCgC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 77073 0.66 0.817389
Target:  5'- cGcCGUGaGCGccgcuguuGC-CGCCgGCGCCGCu -3'
miRNA:   3'- cCuGCAC-CGCu-------UGcGCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 91640 0.66 0.817389
Target:  5'- --uCGUGGCcgccGGugGCGaCgCGCGCCGa -3'
miRNA:   3'- ccuGCACCG----CUugCGC-GgGCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 106117 0.66 0.817389
Target:  5'- cGGGCGUGGCGGcCGUggGCaCCuacCGCCa- -3'
miRNA:   3'- -CCUGCACCGCUuGCG--CG-GGc--GCGGcg -5'
14479 5' -61.6 NC_003521.1 + 39330 0.66 0.817389
Target:  5'- cGGGCGgcuagGGUcAGCGUG-UUGCGCUGCa -3'
miRNA:   3'- -CCUGCa----CCGcUUGCGCgGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 27344 0.66 0.817389
Target:  5'- --cUGUGGauGGCGUGCaCCgGCGCCGUc -3'
miRNA:   3'- ccuGCACCgcUUGCGCG-GG-CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 58782 0.66 0.817389
Target:  5'- -----gGGCGGcGCGCGCCgGCGacgaCGCa -3'
miRNA:   3'- ccugcaCCGCU-UGCGCGGgCGCg---GCG- -5'
14479 5' -61.6 NC_003521.1 + 111626 0.66 0.817389
Target:  5'- cGACGaGGuCGAAC-CGCCgGCgaaacccaaaccGCCGCa -3'
miRNA:   3'- cCUGCaCC-GCUUGcGCGGgCG------------CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226810 0.66 0.817389
Target:  5'- aGGACcUGaCGGuacaGCGCcaugggguccucGCCCGcCGCCGCg -3'
miRNA:   3'- -CCUGcACcGCU----UGCG------------CGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 239557 0.66 0.817389
Target:  5'- cGGGCGgcuagGGUcAGCGUG-UUGCGCUGCa -3'
miRNA:   3'- -CCUGCa----CCGcUUGCGCgGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 79625 0.66 0.817389
Target:  5'- gGGGCGaccgcGGCGccucGGCGuCGUCUGCuGCUGCa -3'
miRNA:   3'- -CCUGCa----CCGC----UUGC-GCGGGCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 45529 0.66 0.817389
Target:  5'- uGGACuugGaGCGGGCGC-CCCGUcaGCgGCg -3'
miRNA:   3'- -CCUGca-C-CGCUUGCGcGGGCG--CGgCG- -5'
14479 5' -61.6 NC_003521.1 + 128170 0.66 0.817389
Target:  5'- aGGGCGUGGgGu-CGUGCagcaCCGgGUgGCa -3'
miRNA:   3'- -CCUGCACCgCuuGCGCG----GGCgCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 43629 0.66 0.817389
Target:  5'- aGGACGaGGaGGAgGCGgCgGCcGCCGCc -3'
miRNA:   3'- -CCUGCaCCgCUUgCGCgGgCG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.