miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 235152 0.66 0.832234
Target:  5'- cGGACG-GGCGccCGUGUCuCGaccccccacccucCGCCGCc -3'
miRNA:   3'- -CCUGCaCCGCuuGCGCGG-GC-------------GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 122803 0.66 0.832234
Target:  5'- uGGCGggcGGCGAAgagauCGCGCUUgagcucguggaugGCGUCGCg -3'
miRNA:   3'- cCUGCa--CCGCUU-----GCGCGGG-------------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 91080 0.66 0.831466
Target:  5'- cGGACaacgcaacaggGGCccgucUGCGCCUGCGCCGg -3'
miRNA:   3'- -CCUGca---------CCGcuu--GCGCGGGCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 135333 0.66 0.830697
Target:  5'- gGGuCG-GGCGGguugccucccucccGCGCGCgCCGUcuCCGCg -3'
miRNA:   3'- -CCuGCaCCGCU--------------UGCGCG-GGCGc-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 180381 0.66 0.830697
Target:  5'- uGGugGUacugGGCGccggaguacugcugGugGUGCUgGCGgCCGCg -3'
miRNA:   3'- -CCugCA----CCGC--------------UugCGCGGgCGC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 187347 0.66 0.830697
Target:  5'- cGACGUGaUGAAggaGCGCUCGCuggaggacgcccugGCCGCc -3'
miRNA:   3'- cCUGCACcGCUUg--CGCGGGCG--------------CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 155612 0.66 0.82838
Target:  5'- aGGAgGUGGCGAccgcuguucucggcgGCGgugguaGCagaaGCGCCGUg -3'
miRNA:   3'- -CCUgCACCGCU---------------UGCg-----CGgg--CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 117588 0.66 0.825269
Target:  5'- uGGGCGcGGCGcuACGaccaccuaccgcCGCCCccguccuacccgGCGCCGUa -3'
miRNA:   3'- -CCUGCaCCGCu-UGC------------GCGGG------------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 116475 0.66 0.825269
Target:  5'- gGGAcaCGUGGCGGcgaugaagaGCGUCCGUGaCgGCc -3'
miRNA:   3'- -CCU--GCACCGCUug-------CGCGGGCGC-GgCG- -5'
14479 5' -61.6 NC_003521.1 + 155401 0.66 0.825269
Target:  5'- -uGCGUGGUcaacGAGCGCGCCUaccaggaGCUGUg -3'
miRNA:   3'- ccUGCACCG----CUUGCGCGGGcg-----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 44198 0.66 0.825269
Target:  5'- cGGGCacccuGCGGACGCGCauccucaaCGgGCUGCu -3'
miRNA:   3'- -CCUGcac--CGCUUGCGCGg-------GCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 71525 0.66 0.825269
Target:  5'- cGACGccGGCcGACGUcaccgaGCCCGCcGCCGa -3'
miRNA:   3'- cCUGCa-CCGcUUGCG------CGGGCG-CGGCg -5'
14479 5' -61.6 NC_003521.1 + 170552 0.66 0.825269
Target:  5'- -----cGGCGccgaccuGCGCcuGCCCGUGCUGCa -3'
miRNA:   3'- ccugcaCCGCu------UGCG--CGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 151318 0.66 0.825269
Target:  5'- aGGCGgccaGGCgGGugGCGUCCGaggGCCuGCg -3'
miRNA:   3'- cCUGCa---CCG-CUugCGCGGGCg--CGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 101377 0.66 0.825269
Target:  5'- ---gGUGcGCGAGC-CG-UCGCGCCGCu -3'
miRNA:   3'- ccugCAC-CGCUUGcGCgGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 149950 0.66 0.825269
Target:  5'- -aACGUGcGCauGCGCGCuucgcguuggcaCUGUGCCGCg -3'
miRNA:   3'- ccUGCAC-CGcuUGCGCG------------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 16736 0.66 0.825269
Target:  5'- cGGCGaccgccGGCGcGCGCGCCCGC-CgGa -3'
miRNA:   3'- cCUGCa-----CCGCuUGCGCGGGCGcGgCg -5'
14479 5' -61.6 NC_003521.1 + 94622 0.66 0.825269
Target:  5'- gGGAUGUGGUcgcaguugaaGGGC-CGUCCGCcgGCCaGCa -3'
miRNA:   3'- -CCUGCACCG----------CUUGcGCGGGCG--CGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 203312 0.66 0.825269
Target:  5'- aGGACGUcGCuGAuguccGCGgGCCCGaaaaCGCCGg -3'
miRNA:   3'- -CCUGCAcCG-CU-----UGCgCGGGC----GCGGCg -5'
14479 5' -61.6 NC_003521.1 + 89736 0.66 0.825269
Target:  5'- gGGcACGggGGCGGugACGgcaGCCgGCGCgGCc -3'
miRNA:   3'- -CC-UGCa-CCGCU--UGCg--CGGgCGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.