miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 30788 0.66 0.816593
Target:  5'- uGGAUGUGgGCGcgguAGCGCaccgaggGCCCGC-CgGCg -3'
miRNA:   3'- -CCUGCAC-CGC----UUGCG-------CGGGCGcGgCG- -5'
14479 5' -61.6 NC_003521.1 + 101127 0.66 0.801208
Target:  5'- gGGGCGggucGGCGGGCaCGCggaaaGCGCgGCg -3'
miRNA:   3'- -CCUGCa---CCGCUUGcGCGgg---CGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 76517 0.66 0.79292
Target:  5'- gGGACcgcGCGAcaccaGgGCCUGCGCCGUc -3'
miRNA:   3'- -CCUGcacCGCUug---CgCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 71780 0.66 0.809367
Target:  5'- cGACGUGGCGcgccgagaccAGCuuGaCCgGCGCgCGCa -3'
miRNA:   3'- cCUGCACCGC----------UUGcgC-GGgCGCG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 68676 0.66 0.801208
Target:  5'- -aGCGUGGaaGAgGCgGCCaUGUGCCGCg -3'
miRNA:   3'- ccUGCACCgcUUgCG-CGG-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 58782 0.66 0.817389
Target:  5'- -----gGGCGGcGCGCGCCgGCGacgaCGCa -3'
miRNA:   3'- ccugcaCCGCU-UGCGCGGgCGCg---GCG- -5'
14479 5' -61.6 NC_003521.1 + 187682 0.66 0.801208
Target:  5'- cGACGUGGUucaaGAccauCGCGCaggaccuuCUGCGUCGCc -3'
miRNA:   3'- cCUGCACCG----CUu---GCGCG--------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 43086 0.66 0.798735
Target:  5'- aGAuCGUGGCcuACGCGCgCgacgagcugaccaaGCGCUGCg -3'
miRNA:   3'- cCU-GCACCGcuUGCGCGgG--------------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 204413 0.66 0.809367
Target:  5'- cGACc--GCGAaauccACGC-CCCGCGCUGCc -3'
miRNA:   3'- cCUGcacCGCU-----UGCGcGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 43629 0.66 0.817389
Target:  5'- aGGACGaGGaGGAgGCGgCgGCcGCCGCc -3'
miRNA:   3'- -CCUGCaCCgCUUgCGCgGgCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 240521 0.66 0.812592
Target:  5'- gGGACGccagaccGGUGGACGCacacacuccgauccgGCCUcCGCUGCg -3'
miRNA:   3'- -CCUGCa------CCGCUUGCG---------------CGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 45529 0.66 0.817389
Target:  5'- uGGACuugGaGCGGGCGC-CCCGUcaGCgGCg -3'
miRNA:   3'- -CCUGca-C-CGCUUGCGcGGGCG--CGgCG- -5'
14479 5' -61.6 NC_003521.1 + 73708 0.66 0.809367
Target:  5'- --uCGUGGaGcGCaGCGaCCCGgGCCGCg -3'
miRNA:   3'- ccuGCACCgCuUG-CGC-GGGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 30226 0.66 0.809367
Target:  5'- cGGcCGuUGGCGucGCGCugcagGUCCGCGCgGUu -3'
miRNA:   3'- -CCuGC-ACCGCu-UGCG-----CGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 119979 0.66 0.79292
Target:  5'- uGGGCGUcGaCGAGCcggGCGacaUGCGCCGCu -3'
miRNA:   3'- -CCUGCAcC-GCUUG---CGCgg-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 220646 0.66 0.79292
Target:  5'- uGACGUcGCG-ACGCGgaCCGuCGUCGCc -3'
miRNA:   3'- cCUGCAcCGCuUGCGCg-GGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 128915 0.66 0.809367
Target:  5'- uGGAUGcgguugagGGCcuGGCGCGCCaGCGUgGCg -3'
miRNA:   3'- -CCUGCa-------CCGc-UUGCGCGGgCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 34445 0.66 0.79292
Target:  5'- -cACGUaGGCGcuGCGgGCCUGggggucguCGCCGCa -3'
miRNA:   3'- ccUGCA-CCGCu-UGCgCGGGC--------GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 79625 0.66 0.817389
Target:  5'- gGGGCGaccgcGGCGccucGGCGuCGUCUGCuGCUGCa -3'
miRNA:   3'- -CCUGCa----CCGC----UUGC-GCGGGCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 60142 0.66 0.809367
Target:  5'- aGGAgGUGuCGAgcACGCagGCCuCGCGCCa- -3'
miRNA:   3'- -CCUgCACcGCU--UGCG--CGG-GCGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.