miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 220646 0.66 0.79292
Target:  5'- uGACGUcGCG-ACGCGgaCCGuCGUCGCc -3'
miRNA:   3'- cCUGCAcCGCuUGCGCg-GGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 60142 0.66 0.809367
Target:  5'- aGGAgGUGuCGAgcACGCagGCCuCGCGCCa- -3'
miRNA:   3'- -CCUgCACcGCU--UGCG--CGG-GCGCGGcg -5'
14479 5' -61.6 NC_003521.1 + 73708 0.66 0.809367
Target:  5'- --uCGUGGaGcGCaGCGaCCCGgGCCGCg -3'
miRNA:   3'- ccuGCACCgCuUG-CGC-GGGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 43086 0.66 0.798735
Target:  5'- aGAuCGUGGCcuACGCGCgCgacgagcugaccaaGCGCUGCg -3'
miRNA:   3'- cCU-GCACCGcuUGCGCGgG--------------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 101127 0.66 0.801208
Target:  5'- gGGGCGggucGGCGGGCaCGCggaaaGCGCgGCg -3'
miRNA:   3'- -CCUGCa---CCGCUUGcGCGgg---CGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 42404 0.66 0.804488
Target:  5'- aGGA-GUGGCGAACcgGCGUcauuauaaucaaacgCCGgaguCGCCGCc -3'
miRNA:   3'- -CCUgCACCGCUUG--CGCG---------------GGC----GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 119979 0.66 0.79292
Target:  5'- uGGGCGUcGaCGAGCcggGCGacaUGCGCCGCu -3'
miRNA:   3'- -CCUGCAcC-GCUUG---CGCgg-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 187682 0.66 0.801208
Target:  5'- cGACGUGGUucaaGAccauCGCGCaggaccuuCUGCGUCGCc -3'
miRNA:   3'- cCUGCACCG----CUu---GCGCG--------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 114917 0.66 0.792085
Target:  5'- uGGACGUGucccuCGAGCGgcugcuggagagcUGCUCGCGCaGCg -3'
miRNA:   3'- -CCUGCACc----GCUUGC-------------GCGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 101615 0.66 0.801208
Target:  5'- aGGACGUcGGCca--GgGCCCGgCGCUGg -3'
miRNA:   3'- -CCUGCA-CCGcuugCgCGGGC-GCGGCg -5'
14479 5' -61.6 NC_003521.1 + 68676 0.66 0.801208
Target:  5'- -aGCGUGGaaGAgGCgGCCaUGUGCCGCg -3'
miRNA:   3'- ccUGCACCgcUUgCG-CGG-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 76517 0.66 0.79292
Target:  5'- gGGACcgcGCGAcaccaGgGCCUGCGCCGUc -3'
miRNA:   3'- -CCUGcacCGCUug---CgCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 145261 0.66 0.78873
Target:  5'- aGGGCGccuccucggccucGGCGGccagcucGCGCGCCgGCGUcuCGCc -3'
miRNA:   3'- -CCUGCa------------CCGCU-------UGCGCGGgCGCG--GCG- -5'
14479 5' -61.6 NC_003521.1 + 66074 0.66 0.801208
Target:  5'- -uACGUGGCagccGAGCGaGCCCuGCguuggGCCGCc -3'
miRNA:   3'- ccUGCACCG----CUUGCgCGGG-CG-----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 36015 0.66 0.801208
Target:  5'- cGGAgGUGGCGGccccACGaccgucuugGCCCucuuCGCCGUa -3'
miRNA:   3'- -CCUgCACCGCU----UGCg--------CGGGc---GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 34445 0.66 0.79292
Target:  5'- -cACGUaGGCGcuGCGgGCCUGggggucguCGCCGCa -3'
miRNA:   3'- ccUGCA-CCGCu-UGCgCGGGC--------GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 30226 0.66 0.809367
Target:  5'- cGGcCGuUGGCGucGCGCugcagGUCCGCGCgGUu -3'
miRNA:   3'- -CCuGC-ACCGCu-UGCG-----CGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 37827 0.66 0.801208
Target:  5'- uGGCG-GGCGAGC-CGCCCGgaGaCUGUa -3'
miRNA:   3'- cCUGCaCCGCUUGcGCGGGCg-C-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 69267 0.66 0.806933
Target:  5'- cGACGUGGCaagcGGucuguuuaaccagcGCGCaGCCCcgacacagggcgGCGCCGUc -3'
miRNA:   3'- cCUGCACCG----CU--------------UGCG-CGGG------------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 102016 0.66 0.809367
Target:  5'- aGGGCGUGGuUGAGCaccuGgGCCacggCGCGCaGCa -3'
miRNA:   3'- -CCUGCACC-GCUUG----CgCGG----GCGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.