miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 349 0.66 0.809367
Target:  5'- -aGCGUGaGCugccggaGGCgGCGCCUGCGaCCGCu -3'
miRNA:   3'- ccUGCAC-CGc------UUG-CGCGGGCGC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 1352 0.68 0.676562
Target:  5'- cGGCuggGGCuGAACGCGCCgCGgGCCa- -3'
miRNA:   3'- cCUGca-CCG-CUUGCGCGG-GCgCGGcg -5'
14479 5' -61.6 NC_003521.1 + 1426 0.67 0.767346
Target:  5'- cGACGUGaaCGAACuGgGCCgcgagcUGCGCCGCc -3'
miRNA:   3'- cCUGCACc-GCUUG-CgCGG------GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 1593 0.66 0.836049
Target:  5'- cGGcCGUGcaGCGccacauccaccaGCGCCUGUGCUGCg -3'
miRNA:   3'- -CCuGCAC--CGCuug---------CGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 5313 0.71 0.545545
Target:  5'- -cGCGggGGCG-GCGUGcCCCGCcgGCCGCg -3'
miRNA:   3'- ccUGCa-CCGCuUGCGC-GGGCG--CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 5665 0.68 0.72278
Target:  5'- gGGugGggGGuCGAGacacggGCGCCCGU-CCGCg -3'
miRNA:   3'- -CCugCa-CC-GCUUg-----CGCGGGCGcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 7736 0.66 0.808557
Target:  5'- aGGGCGgcgcgagcGGCGGAgGCGgCgGCagucccagcagacGCCGCa -3'
miRNA:   3'- -CCUGCa-------CCGCUUgCGCgGgCG-------------CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 11247 0.72 0.474054
Target:  5'- cGAUGacGGCGAACGUcgaGCCCGCGuuGg -3'
miRNA:   3'- cCUGCa-CCGCUUGCG---CGGGCGCggCg -5'
14479 5' -61.6 NC_003521.1 + 12758 0.69 0.629568
Target:  5'- cGGACGUGaGCuGGGaccCGCGCgUGCGCCcCg -3'
miRNA:   3'- -CCUGCAC-CG-CUU---GCGCGgGCGCGGcG- -5'
14479 5' -61.6 NC_003521.1 + 13186 0.67 0.758608
Target:  5'- uGACcaGGCGuGC-CGCUCGgGCCGCc -3'
miRNA:   3'- cCUGcaCCGCuUGcGCGGGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 14385 0.67 0.784509
Target:  5'- uGGACGa-GCuGGCGCGCUacggCGUGUCGCg -3'
miRNA:   3'- -CCUGCacCGcUUGCGCGG----GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 14434 0.66 0.79292
Target:  5'- uGACGUGGUGcacACG-GCCCuGCgGCgGCg -3'
miRNA:   3'- cCUGCACCGCu--UGCgCGGG-CG-CGgCG- -5'
14479 5' -61.6 NC_003521.1 + 14696 0.67 0.767346
Target:  5'- uGGugGUGGgGcaucCGCGCCaaccuGUGCaCGCc -3'
miRNA:   3'- -CCugCACCgCuu--GCGCGGg----CGCG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 14742 0.68 0.676562
Target:  5'- uGGGCGUGaCGGGC-CGgCCGCgGCCGg -3'
miRNA:   3'- -CCUGCACcGCUUGcGCgGGCG-CGGCg -5'
14479 5' -61.6 NC_003521.1 + 14778 0.66 0.801209
Target:  5'- --uCGUGGCcGAgGUGCUgGUGCUGCu -3'
miRNA:   3'- ccuGCACCGcUUgCGCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 15048 0.68 0.731854
Target:  5'- uGACGagcgGcGCGAGCGCgagcgGCgCGUGCUGCa -3'
miRNA:   3'- cCUGCa---C-CGCUUGCG-----CGgGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 15531 0.72 0.456907
Target:  5'- cGGcAUGUGGCGAACGCGCUgggaagaggggGCGCC-Ca -3'
miRNA:   3'- -CC-UGCACCGCUUGCGCGGg----------CGCGGcG- -5'
14479 5' -61.6 NC_003521.1 + 16211 0.7 0.582608
Target:  5'- cGAgGUGGCG---GCGCCC-UGCCGCc -3'
miRNA:   3'- cCUgCACCGCuugCGCGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 16703 0.7 0.60134
Target:  5'- -cAUGUGGCaGACGCGCgugaUGCGCgGCg -3'
miRNA:   3'- ccUGCACCGcUUGCGCGg---GCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 16736 0.66 0.825269
Target:  5'- cGGCGaccgccGGCGcGCGCGCCCGC-CgGa -3'
miRNA:   3'- cCUGCa-----CCGCuUGCGCGGGCGcGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.