miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 16793 0.69 0.667199
Target:  5'- gGGGCGacGGCGccCGCcccgaccgccggGCCCGCcgcuGCCGCa -3'
miRNA:   3'- -CCUGCa-CCGCuuGCG------------CGGGCG----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 16854 0.68 0.732757
Target:  5'- cGGCGcaGGCGGACGUcuacgacgugcguucCCCGCGgCCGCc -3'
miRNA:   3'- cCUGCa-CCGCUUGCGc--------------GGGCGC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 17013 0.66 0.801209
Target:  5'- cGGugGcGGCG-GCGCagGCCCGuCGUCugGCg -3'
miRNA:   3'- -CCugCaCCGCuUGCG--CGGGC-GCGG--CG- -5'
14479 5' -61.6 NC_003521.1 + 17133 0.66 0.796251
Target:  5'- aGGACGUGGaCGAgugguuccagcagcgGCGCGaggCCGaGgCGCa -3'
miRNA:   3'- -CCUGCACC-GCU---------------UGCGCg--GGCgCgGCG- -5'
14479 5' -61.6 NC_003521.1 + 17598 0.7 0.563996
Target:  5'- -----cGGCuGGACGCGCCagGCGUCGCg -3'
miRNA:   3'- ccugcaCCG-CUUGCGCGGg-CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 18176 0.67 0.767346
Target:  5'- cGugGaGGCGcuGCGCGCCUGC-CgGCc -3'
miRNA:   3'- cCugCaCCGCu-UGCGCGGGCGcGgCG- -5'
14479 5' -61.6 NC_003521.1 + 18262 0.73 0.448459
Target:  5'- cGGugGUGG-GGACcUGCCCGCGacgggagggcCCGCa -3'
miRNA:   3'- -CCugCACCgCUUGcGCGGGCGC----------GGCG- -5'
14479 5' -61.6 NC_003521.1 + 18715 0.66 0.79292
Target:  5'- cGGCGcaGCGccucgaGACGCuGCCgGCGCUGCa -3'
miRNA:   3'- cCUGCacCGC------UUGCG-CGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 18745 0.72 0.456907
Target:  5'- cGugGcGGCGGugGCGCCgaCGgGUCGCu -3'
miRNA:   3'- cCugCaCCGCUugCGCGG--GCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 18810 0.67 0.758608
Target:  5'- -cGCGUGGCcaaguGCuuccCGCCCaCGCCGCa -3'
miRNA:   3'- ccUGCACCGcu---UGc---GCGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 18895 0.72 0.474054
Target:  5'- aGGACGaGGCGccGCGgcaGCCCcgaagggugGCGCCGCg -3'
miRNA:   3'- -CCUGCaCCGCu-UGCg--CGGG---------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 18975 0.67 0.787888
Target:  5'- aGGAgGgGGUcgaGGACGCGCCgCGCGacgagggagacacgcCCGCc -3'
miRNA:   3'- -CCUgCaCCG---CUUGCGCGG-GCGC---------------GGCG- -5'
14479 5' -61.6 NC_003521.1 + 19152 0.67 0.775982
Target:  5'- cGGCGUGGUGAcCGagaGCaCgGCGCUGg -3'
miRNA:   3'- cCUGCACCGCUuGCg--CG-GgCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 20167 0.74 0.39188
Target:  5'- aGACGacGGCGAcgACG-GUCCGCGUCGCg -3'
miRNA:   3'- cCUGCa-CCGCU--UGCgCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 20698 0.73 0.412352
Target:  5'- cGGGCcuggccuuucugGGCGGACGCGaCCCGUaCCGCu -3'
miRNA:   3'- -CCUGca----------CCGCUUGCGC-GGGCGcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 21951 0.67 0.781963
Target:  5'- uGGAgcaGUgGGCGAGCGCGgCgGgacucguucgguuuCGCCGCu -3'
miRNA:   3'- -CCUg--CA-CCGCUUGCGCgGgC--------------GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 22178 0.68 0.72278
Target:  5'- gGGACGaGGCGc-CGcCGgCCGUGgCCGCu -3'
miRNA:   3'- -CCUGCaCCGCuuGC-GCgGGCGC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 22428 0.75 0.347235
Target:  5'- cGGCGUGGcCGAguAC-CGCCCGCGCuucaCGCg -3'
miRNA:   3'- cCUGCACC-GCU--UGcGCGGGCGCG----GCG- -5'
14479 5' -61.6 NC_003521.1 + 23544 0.7 0.573284
Target:  5'- cGGugGUGGUGGccaGCGCCUGCuCCu- -3'
miRNA:   3'- -CCugCACCGCUug-CGCGGGCGcGGcg -5'
14479 5' -61.6 NC_003521.1 + 24125 0.68 0.731854
Target:  5'- aGACGUucggagGGCGuuCGUGCCuauaaCGuCGCCGCg -3'
miRNA:   3'- cCUGCA------CCGCuuGCGCGG-----GC-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.