miRNA display CGI


Results 1 - 20 of 551 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 125461 1.12 0.00121
Target:  5'- cGGACGUGGCGAACGCGCCCGCGCCGCc -3'
miRNA:   3'- -CCUGCACCGCUUGCGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 166616 0.85 0.084305
Target:  5'- aGGACGUGGCaGAagacggcgucgggccGCGCGCCgGgCGCCGCg -3'
miRNA:   3'- -CCUGCACCG-CU---------------UGCGCGGgC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 130746 0.83 0.103961
Target:  5'- gGGACGUgucGGCGGGCGCGagcgCCGCGCCGg -3'
miRNA:   3'- -CCUGCA---CCGCUUGCGCg---GGCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 165269 0.81 0.156043
Target:  5'- aGGGCGcUGGCGuagcCGcCGCCgGCGCCGCu -3'
miRNA:   3'- -CCUGC-ACCGCuu--GC-GCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 129732 0.8 0.1674
Target:  5'- cGuCGacGCGAGCGCGUCCGCGCCGUc -3'
miRNA:   3'- cCuGCacCGCUUGCGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 196735 0.79 0.206014
Target:  5'- cGGugGUGGCGGcgGCGCCUGCaCCGUc -3'
miRNA:   3'- -CCugCACCGCUugCGCGGGCGcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 125428 0.78 0.210751
Target:  5'- aGGcCGUGGCGG-C-CGCCCGCGCCcuGCa -3'
miRNA:   3'- -CCuGCACCGCUuGcGCGGGCGCGG--CG- -5'
14479 5' -61.6 NC_003521.1 + 113863 0.78 0.215582
Target:  5'- -aGCGUGGCGGugGUGUaaGCGCCGUc -3'
miRNA:   3'- ccUGCACCGCUugCGCGggCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 187607 0.78 0.228587
Target:  5'- cGGugGgcacggccugccgGGCGAGcCGgGCCgCGCGCCGCu -3'
miRNA:   3'- -CCugCa------------CCGCUU-GCgCGG-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 36788 0.78 0.235861
Target:  5'- cGGGCGUGGaGGACGCGCCUuucggGCagGCCGUg -3'
miRNA:   3'- -CCUGCACCgCUUGCGCGGG-----CG--CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 116350 0.78 0.236387
Target:  5'- cGGACGgaccgcgagcgcggcGGCGAACGCGUgC-CGCCGCg -3'
miRNA:   3'- -CCUGCa--------------CCGCUUGCGCGgGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226308 0.78 0.237974
Target:  5'- cGGGCGUGGUgucguugaggaacaaGAugugcauggugcGCGCGCCCcgcggguaGCGCCGCg -3'
miRNA:   3'- -CCUGCACCG---------------CU------------UGCGCGGG--------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 105307 0.77 0.241174
Target:  5'- cGGGCGUGGgGAcgcCGCGCgaCGuCGCCGCu -3'
miRNA:   3'- -CCUGCACCgCUu--GCGCGg-GC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 124124 0.77 0.246587
Target:  5'- --cUGUGGUGAuuCcCGCCCGCGCCGCu -3'
miRNA:   3'- ccuGCACCGCUu-GcGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 91751 0.77 0.246587
Target:  5'- aGGGCGUGcGaGAGCGCGgCCGCGUCGa -3'
miRNA:   3'- -CCUGCAC-CgCUUGCGCgGGCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 104684 0.77 0.252101
Target:  5'- aGGugGUGGCG-GCGCGCCacgggguagaGCGCCu- -3'
miRNA:   3'- -CCugCACCGCuUGCGCGGg---------CGCGGcg -5'
14479 5' -61.6 NC_003521.1 + 90838 0.77 0.252101
Target:  5'- cGGCG-GGUGcGCGcCGCCCGUGCUGCu -3'
miRNA:   3'- cCUGCaCCGCuUGC-GCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 180107 0.77 0.263431
Target:  5'- aGGGCaGcGGCGuggUGCGaCCCGCGCCGCc -3'
miRNA:   3'- -CCUG-CaCCGCuu-GCGC-GGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 197858 0.77 0.263431
Target:  5'- uGGGCGccGGCGGGuCGCGCUCGCuggGCUGCa -3'
miRNA:   3'- -CCUGCa-CCGCUU-GCGCGGGCG---CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 166217 0.77 0.268664
Target:  5'- uGGCGcGGCGGcgagGCGCGCcggccgcgggacgCCGCGCCGCc -3'
miRNA:   3'- cCUGCaCCGCU----UGCGCG-------------GGCGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.