miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 77863 0.74 0.361705
Target:  5'- aGACG-GGCGAugGCGCCgGCcUCGUa -3'
miRNA:   3'- cCUGCaCCGCUugCGCGGgCGcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 127008 0.75 0.319555
Target:  5'- cGACGUGGCG---GUGCCCGacgaCGCCGCc -3'
miRNA:   3'- cCUGCACCGCuugCGCGGGC----GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 224085 0.75 0.319555
Target:  5'- cGGCG-GGCGcGCGCGCCgGCgGUCGCc -3'
miRNA:   3'- cCUGCaCCGCuUGCGCGGgCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 63875 0.75 0.326317
Target:  5'- uGGACGaGGCG-GCGCGCCgGgaGCUGCa -3'
miRNA:   3'- -CCUGCaCCGCuUGCGCGGgCg-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 49088 0.75 0.326317
Target:  5'- cGGACGgggGGCGAuauccacaaaguGCGCGUggugaccgCgGCGCCGCu -3'
miRNA:   3'- -CCUGCa--CCGCU------------UGCGCG--------GgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 216625 0.75 0.326317
Target:  5'- cGACGguaGGCGGGCGCGCC-GaCGCCGg -3'
miRNA:   3'- cCUGCa--CCGCUUGCGCGGgC-GCGGCg -5'
14479 5' -61.6 NC_003521.1 + 83763 0.75 0.340157
Target:  5'- gGGACaggGUGGCG-GCGCcCCC-CGCCGCg -3'
miRNA:   3'- -CCUG---CACCGCuUGCGcGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 74143 0.75 0.354418
Target:  5'- cGACGUGGCGcGCcacgGgGCCCagGUGCCGCu -3'
miRNA:   3'- cCUGCACCGCuUG----CgCGGG--CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 137976 0.74 0.361705
Target:  5'- cGACGUGGUGcGCuGUGUCCGCG-CGCa -3'
miRNA:   3'- cCUGCACCGCuUG-CGCGGGCGCgGCG- -5'
14479 5' -61.6 NC_003521.1 + 40479 0.76 0.299903
Target:  5'- aGAUGUGuccGCG-GCGCGCCacgGCGCCGCa -3'
miRNA:   3'- cCUGCAC---CGCuUGCGCGGg--CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 124453 0.76 0.293563
Target:  5'- uGGGcCGcGGCGGcACGCGUUCGcCGCCGCg -3'
miRNA:   3'- -CCU-GCaCCGCU-UGCGCGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 74590 0.76 0.281198
Target:  5'- cGGCGcGGCGucccgcggccGGCGCGCCuCGcCGCCGCg -3'
miRNA:   3'- cCUGCaCCGC----------UUGCGCGG-GC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 130746 0.83 0.103961
Target:  5'- gGGACGUgucGGCGGGCGCGagcgCCGCGCCGg -3'
miRNA:   3'- -CCUGCA---CCGCUUGCGCg---GGCGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 129732 0.8 0.1674
Target:  5'- cGuCGacGCGAGCGCGUCCGCGCCGUc -3'
miRNA:   3'- cCuGCacCGCUUGCGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 196735 0.79 0.206014
Target:  5'- cGGugGUGGCGGcgGCGCCUGCaCCGUc -3'
miRNA:   3'- -CCugCACCGCUugCGCGGGCGcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 113863 0.78 0.215582
Target:  5'- -aGCGUGGCGGugGUGUaaGCGCCGUc -3'
miRNA:   3'- ccUGCACCGCUugCGCGggCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 36788 0.78 0.235861
Target:  5'- cGGGCGUGGaGGACGCGCCUuucggGCagGCCGUg -3'
miRNA:   3'- -CCUGCACCgCUUGCGCGGG-----CG--CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226308 0.78 0.237974
Target:  5'- cGGGCGUGGUgucguugaggaacaaGAugugcauggugcGCGCGCCCcgcggguaGCGCCGCg -3'
miRNA:   3'- -CCUGCACCG---------------CU------------UGCGCGGG--------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 124124 0.77 0.246587
Target:  5'- --cUGUGGUGAuuCcCGCCCGCGCCGCu -3'
miRNA:   3'- ccuGCACCGCUu-GcGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 101017 0.76 0.281198
Target:  5'- gGGGCGcguccUGGCGGGCaCGCCCGUGCaGCu -3'
miRNA:   3'- -CCUGC-----ACCGCUUGcGCGGGCGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.