miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 166616 0.85 0.084305
Target:  5'- aGGACGUGGCaGAagacggcgucgggccGCGCGCCgGgCGCCGCg -3'
miRNA:   3'- -CCUGCACCG-CU---------------UGCGCGGgC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 22428 0.75 0.347235
Target:  5'- cGGCGUGGcCGAguAC-CGCCCGCGCuucaCGCg -3'
miRNA:   3'- cCUGCACC-GCU--UGcGCGGGCGCG----GCG- -5'
14479 5' -61.6 NC_003521.1 + 121881 0.74 0.368352
Target:  5'- cGGGCGcUGGCccugacgGGACGCcgccGCCCaCGCCGCg -3'
miRNA:   3'- -CCUGC-ACCG-------CUUGCG----CGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 156139 0.66 0.836049
Target:  5'- uGGAgGUgugcacgcagcugcuGGCGcugcuGCGaCGCCUGUGCgGCa -3'
miRNA:   3'- -CCUgCA---------------CCGCu----UGC-GCGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 116350 0.78 0.236387
Target:  5'- cGGACGgaccgcgagcgcggcGGCGAACGCGUgC-CGCCGCg -3'
miRNA:   3'- -CCUGCa--------------CCGCUUGCGCGgGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 105307 0.77 0.241174
Target:  5'- cGGGCGUGGgGAcgcCGCGCgaCGuCGCCGCu -3'
miRNA:   3'- -CCUGCACCgCUu--GCGCGg-GC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 90838 0.77 0.252101
Target:  5'- cGGCG-GGUGcGCGcCGCCCGUGCUGCu -3'
miRNA:   3'- cCUGCaCCGCuUGC-GCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 104684 0.77 0.252101
Target:  5'- aGGugGUGGCG-GCGCGCCacgggguagaGCGCCu- -3'
miRNA:   3'- -CCugCACCGCuUGCGCGGg---------CGCGGcg -5'
14479 5' -61.6 NC_003521.1 + 166217 0.77 0.268664
Target:  5'- uGGCGcGGCGGcgagGCGCGCcggccgcgggacgCCGCGCCGCc -3'
miRNA:   3'- cCUGCaCCGCU----UGCGCG-------------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 199833 0.75 0.333184
Target:  5'- uGACGUGGgGGAUGC-CCC-CGCUGCg -3'
miRNA:   3'- cCUGCACCgCUUGCGcGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 119200 0.76 0.275172
Target:  5'- aGGACGUGGCGc-UGCGCCagguggugaGCGCCaGCc -3'
miRNA:   3'- -CCUGCACCGCuuGCGCGGg--------CGCGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 197858 0.77 0.263431
Target:  5'- uGGGCGccGGCGGGuCGCGCUCGCuggGCUGCa -3'
miRNA:   3'- -CCUGCa-CCGCUU-GCGCGGGCG---CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 165269 0.81 0.156043
Target:  5'- aGGGCGcUGGCGuagcCGcCGCCgGCGCCGCu -3'
miRNA:   3'- -CCUGC-ACCGCuu--GC-GCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 196275 0.76 0.299903
Target:  5'- aGGGCGUccucauGUGAGCGCGUgCCGgGCCGCu -3'
miRNA:   3'- -CCUGCAc-----CGCUUGCGCG-GGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 125428 0.78 0.210751
Target:  5'- aGGcCGUGGCGG-C-CGCCCGCGCCcuGCa -3'
miRNA:   3'- -CCuGCACCGCUuGcGCGGGCGCGG--CG- -5'
14479 5' -61.6 NC_003521.1 + 180107 0.77 0.263431
Target:  5'- aGGGCaGcGGCGuggUGCGaCCCGCGCCGCc -3'
miRNA:   3'- -CCUG-CaCCGCuu-GCGC-GGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 118585 0.75 0.310265
Target:  5'- cGACGUGGCG-GCGCucagucgccggcaCCCGCGCuCGCa -3'
miRNA:   3'- cCUGCACCGCuUGCGc------------GGGCGCG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 49715 0.75 0.354418
Target:  5'- uGGACacgauagaacugGUGGaCGAgACGCaGCCCGCcGCCGCc -3'
miRNA:   3'- -CCUG------------CACC-GCU-UGCG-CGGGCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 187607 0.78 0.228587
Target:  5'- cGGugGgcacggccugccgGGCGAGcCGgGCCgCGCGCCGCu -3'
miRNA:   3'- -CCugCa------------CCGCUU-GCgCGG-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 91751 0.77 0.246587
Target:  5'- aGGGCGUGcGaGAGCGCGgCCGCGUCGa -3'
miRNA:   3'- -CCUGCAC-CgCUUGCGCgGGCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.