miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 240521 0.66 0.812592
Target:  5'- gGGACGccagaccGGUGGACGCacacacuccgauccgGCCUcCGCUGCg -3'
miRNA:   3'- -CCUGCa------CCGCUUGCG---------------CGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 240451 0.66 0.833
Target:  5'- -cGCGUgaGGCGGGCaGCGgUCGCaggcGCCGCc -3'
miRNA:   3'- ccUGCA--CCGCUUG-CGCgGGCG----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 240121 0.67 0.767346
Target:  5'- uGGGCGUgcggucgucccGGCGGGCGCGgaaaGCGCUGg -3'
miRNA:   3'- -CCUGCA-----------CCGCUUGCGCggg-CGCGGCg -5'
14479 5' -61.6 NC_003521.1 + 239687 0.72 0.465439
Target:  5'- gGGACGgcaGCGGuuCGUGuCCCGuCGCCGCc -3'
miRNA:   3'- -CCUGCac-CGCUu-GCGC-GGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 239557 0.66 0.817389
Target:  5'- cGGGCGgcuagGGUcAGCGUG-UUGCGCUGCa -3'
miRNA:   3'- -CCUGCa----CCGcUUGCGCgGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 238471 0.68 0.685895
Target:  5'- cGGGCGgGGCGGagACGCgGCCCaGgGUCaGCa -3'
miRNA:   3'- -CCUGCaCCGCU--UGCG-CGGG-CgCGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 236444 0.68 0.676562
Target:  5'- cGGGugaGUGaGCGAGCGgGaCgCGgGCCGCg -3'
miRNA:   3'- -CCUg--CAC-CGCUUGCgC-GgGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 236139 0.68 0.685895
Target:  5'- gGGACGggGGgGAcCGCGCgaCGuCGCCGg -3'
miRNA:   3'- -CCUGCa-CCgCUuGCGCGg-GC-GCGGCg -5'
14479 5' -61.6 NC_003521.1 + 235597 0.67 0.767346
Target:  5'- aGGACGagaGGCGGACucggGCggaGCCCGa-CCGCg -3'
miRNA:   3'- -CCUGCa--CCGCUUG----CG---CGGGCgcGGCG- -5'
14479 5' -61.6 NC_003521.1 + 235270 0.74 0.396545
Target:  5'- cGGACGgaacaacgauggcGGCGGcCGCGCCgGCuGCCGUc -3'
miRNA:   3'- -CCUGCa------------CCGCUuGCGCGGgCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 235152 0.66 0.832234
Target:  5'- cGGACG-GGCGccCGUGUCuCGaccccccacccucCGCCGCc -3'
miRNA:   3'- -CCUGCaCCGCuuGCGCGG-GC-------------GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 234083 0.68 0.731854
Target:  5'- gGGACucGGCGAGCGCuGgCUGCGUCa- -3'
miRNA:   3'- -CCUGcaCCGCUUGCG-CgGGCGCGGcg -5'
14479 5' -61.6 NC_003521.1 + 233382 0.68 0.72278
Target:  5'- -cGCGUGGUGc-UGUGCgCCGCGuCCGUg -3'
miRNA:   3'- ccUGCACCGCuuGCGCG-GGCGC-GGCG- -5'
14479 5' -61.6 NC_003521.1 + 226949 0.66 0.824487
Target:  5'- cGGCGaaauccaUGGCG-GCGcCGCCCGCagagacccCCGCg -3'
miRNA:   3'- cCUGC-------ACCGCuUGC-GCGGGCGc-------GGCG- -5'
14479 5' -61.6 NC_003521.1 + 226810 0.66 0.817389
Target:  5'- aGGACcUGaCGGuacaGCGCcaugggguccucGCCCGcCGCCGCg -3'
miRNA:   3'- -CCUGcACcGCU----UGCG------------CGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226545 0.69 0.667199
Target:  5'- aGGCGUGGa-GAUGaCGCUgucgucacgauCGCGCCGCg -3'
miRNA:   3'- cCUGCACCgcUUGC-GCGG-----------GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 226308 0.78 0.237974
Target:  5'- cGGGCGUGGUgucguugaggaacaaGAugugcauggugcGCGCGCCCcgcggguaGCGCCGCg -3'
miRNA:   3'- -CCUGCACCG---------------CU------------UGCGCGGG--------CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 225769 0.7 0.60134
Target:  5'- -cACGcGcCGcuCGCGCUCGCGCCGCu -3'
miRNA:   3'- ccUGCaCcGCuuGCGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 225587 0.7 0.573284
Target:  5'- uGGCGcucGGCGGccuCGCGCUCG-GCCGCc -3'
miRNA:   3'- cCUGCa--CCGCUu--GCGCGGGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 224811 0.69 0.667199
Target:  5'- -cGCGUGGCGuAGgGCGUCUGCgGCUGg -3'
miRNA:   3'- ccUGCACCGC-UUgCGCGGGCG-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.