miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 24170 0.67 0.97041
Target:  5'- gGGCA-CUCggaaaggagcgaaGCCGGGCGgCAUGgGCGGa -3'
miRNA:   3'- -CCGUaGAG-------------CGGCCUGUgGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 122120 0.68 0.968972
Target:  5'- cGGCGUCUCGCCGcGGCugaacacggcuuucaGCaCGUGcccCGAg -3'
miRNA:   3'- -CCGUAGAGCGGC-CUG---------------UG-GUACau-GCU- -5'
14499 5' -54 NC_003521.1 + 174748 0.68 0.967786
Target:  5'- cGCAgggCUCGCuCGGcUGCCAcGUACGGc -3'
miRNA:   3'- cCGUa--GAGCG-GCCuGUGGUaCAUGCU- -5'
14499 5' -54 NC_003521.1 + 209815 0.68 0.967786
Target:  5'- cGCGUcCUCGCCGG-CGCCGUcGU-CGc -3'
miRNA:   3'- cCGUA-GAGCGGCCuGUGGUA-CAuGCu -5'
14499 5' -54 NC_003521.1 + 123114 0.68 0.967786
Target:  5'- -cCGUcCUCGCCGG--GCCGcUGUACGAa -3'
miRNA:   3'- ccGUA-GAGCGGCCugUGGU-ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 154672 0.68 0.964682
Target:  5'- cGGCAgCgagaCGCUGGAgGCUaccgcGUGUGCGAc -3'
miRNA:   3'- -CCGUaGa---GCGGCCUgUGG-----UACAUGCU- -5'
14499 5' -54 NC_003521.1 + 156775 0.68 0.964682
Target:  5'- gGGCcUCUCGCUcgagaaGGugGCCGUGgacuuCGGg -3'
miRNA:   3'- -CCGuAGAGCGG------CCugUGGUACau---GCU- -5'
14499 5' -54 NC_003521.1 + 28324 0.68 0.96436
Target:  5'- aGGCcuacgugGUCUCGUCGG---CCAUGUGCGu -3'
miRNA:   3'- -CCG-------UAGAGCGGCCuguGGUACAUGCu -5'
14499 5' -54 NC_003521.1 + 196574 0.68 0.961374
Target:  5'- cGGCGUgaCGCCGGACucCCGcGcACGGc -3'
miRNA:   3'- -CCGUAgaGCGGCCUGu-GGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 205939 0.68 0.954128
Target:  5'- uGCGUCUCGCUGGGCugGCCcucgcaGUGCu- -3'
miRNA:   3'- cCGUAGAGCGGCCUG--UGGua----CAUGcu -5'
14499 5' -54 NC_003521.1 + 17095 0.68 0.954128
Target:  5'- gGGCuucgacCUCGaggaGGACACCGUGUuCGAc -3'
miRNA:   3'- -CCGua----GAGCgg--CCUGUGGUACAuGCU- -5'
14499 5' -54 NC_003521.1 + 25978 0.68 0.954128
Target:  5'- aGGC-UCUCGCCGGGCAgCAa------ -3'
miRNA:   3'- -CCGuAGAGCGGCCUGUgGUacaugcu -5'
14499 5' -54 NC_003521.1 + 26299 0.68 0.954128
Target:  5'- gGGCAUCUUGgaGGGCACCGacUACa- -3'
miRNA:   3'- -CCGUAGAGCggCCUGUGGUacAUGcu -5'
14499 5' -54 NC_003521.1 + 106856 0.69 0.950182
Target:  5'- aGCGUCcgCGCaUGGACGCCc-GUACGGu -3'
miRNA:   3'- cCGUAGa-GCG-GCCUGUGGuaCAUGCU- -5'
14499 5' -54 NC_003521.1 + 31372 0.69 0.950182
Target:  5'- uGCAcgUCGCCGGACAgCAUgcGUACa- -3'
miRNA:   3'- cCGUagAGCGGCCUGUgGUA--CAUGcu -5'
14499 5' -54 NC_003521.1 + 120482 0.69 0.946016
Target:  5'- aGGUGUCUcCGCCGaGAgGCgCGUGUGgGGg -3'
miRNA:   3'- -CCGUAGA-GCGGC-CUgUG-GUACAUgCU- -5'
14499 5' -54 NC_003521.1 + 177741 0.69 0.946016
Target:  5'- gGGCAgcgCGCCGG-CGCagcUGUACGGg -3'
miRNA:   3'- -CCGUagaGCGGCCuGUGgu-ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 151861 0.69 0.945587
Target:  5'- gGGCGcugcagaUCagUCGCCGGGCGCUGUGcUGCa- -3'
miRNA:   3'- -CCGU-------AG--AGCGGCCUGUGGUAC-AUGcu -5'
14499 5' -54 NC_003521.1 + 224410 0.69 0.941627
Target:  5'- cGGUAcacCUCGCCGGccaggcGCugCGUGguggGCGAg -3'
miRNA:   3'- -CCGUa--GAGCGGCC------UGugGUACa---UGCU- -5'
14499 5' -54 NC_003521.1 + 78214 0.69 0.941627
Target:  5'- cGGCG-CUCGUCGGAgGCUGUcGaGCGAg -3'
miRNA:   3'- -CCGUaGAGCGGCCUgUGGUA-CaUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.